Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    40   6e-04
Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    30   0.82 
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of ...    29   1.9  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 254 SSKLFRVERIKSSKHFPYWQKRILDEL--KIHEETRVTVVKNIPEINAKLWKIKHLIKIT 427
           +SKL+     + +   P W K+ ++ L     +  R+ V +N   IN +LWKIKHLI++ 
Sbjct: 56  ASKLWMAWLYRDTSAEPKWTKKHVENLFGADFKVGRMEVFRNTELINTELWKIKHLIELR 115

Query: 428 PI 433
           P+
Sbjct: 116 PV 117


>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 168 GYKHPGGIRYPGGITYYPRFPDY 236
           GY   GG  YPGG   YP+ P Y
Sbjct: 62  GYPGQGGAPYPGGSGGYPQAPQY 84


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 168 GYKHPGGIRYPGGITYYPRFPDY 236
           GY   GG  YPGG   YP+ P Y
Sbjct: 104 GYPGQGGAPYPGGSGGYPQAPQY 126


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 394 FSIDFWYIFNHSDSGLLMNFQFIQYPFLP-VWKMFA*FNSLY 272
           FS+DFW  +    S     F  I+Y  LP +WK    FN L+
Sbjct: 132 FSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELF 173


>AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform a protein.
          Length = 262

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 EITHQSCSE*SELNQANIFHTGKKGYWMN*KFMRRP 353
           +I HQ  S  + LN+  + H+GKK +    +F RRP
Sbjct: 5   DICHQKFSNKTNLNRHKVMHSGKKKF--ECQFCRRP 38


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 251  NSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPE 382
            N ++   ++  ++ + + YW+  I DEL +     V +V  IP+
Sbjct: 995  NYNQTLDLKHARAVRQYQYWKDNIYDELSLFINYIVEMVNAIPK 1038


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,772,723
Number of Sequences: 27780
Number of extensions: 202232
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)