Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49820.1 68414.m05586 5-methylthioribose kinase family contai...    28   2.4  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   3.1  
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi...    27   4.1  
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...    27   4.1  
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.2  

>At1g49820.1 68414.m05586 5-methylthioribose kinase family contains
           TIGRfam TIGR01767: 5-methylthioribose kinase profile
          Length = 420

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 309 QYGKCLLDLIRSTLNNFDELFQDLCNLGIWDSMLCPQGNEYLLDVYN 169
           +Y + +L  I  T N F++ F     + +WD      G  YL D+YN
Sbjct: 294 EYKQWILRTIEQTWNLFNKRF-----IALWDQNKDGPGEAYLADIYN 335


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 248 NNSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHL 415
           N+       ER     H    +KRI D  K H E +V V++   E  + L KI+ L
Sbjct: 768 NDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATERESSLQKIEEL 823


>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 370

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +2

Query: 266 FRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIK 409
           ++ +RIK+  +   W+   +D  +  ++  + V+K+I     ++W++K
Sbjct: 231 WKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVK 278


>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +2

Query: 266 FRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIK 409
           ++ +RIK+  +   W+   +D  +  ++  + V+K+I     ++W++K
Sbjct: 285 WKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVK 332


>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP-glucose:salicylic acid
           glucosyltransferase [Nicotiana tabacum] GI:7385017;
           contains Pfam profiles PF00201: UDP-glucoronosyl and
           UDP-glucosyl transferase, PF01535: PPR repeat
          Length = 1184

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +2

Query: 191 SLPWGHNILSQIPRLQRS*NNSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVK 370
           S  +GH+ L+  P L     N    F  E    S  +PY  + ++D+L   +   + +  
Sbjct: 152 STKYGHSTLASFPSLPILNANDLPSFLCE----SSSYPYILRTVIDQLSNIDRVDIVLCN 207

Query: 371 NIPEINAKLWK 403
              ++  KL K
Sbjct: 208 TFDKLEEKLLK 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,133
Number of Sequences: 28952
Number of extensions: 181847
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)