Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0728
(305 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 112 2e-24
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ... 99 1e-20
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 95 3e-19
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ... 91 3e-18
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ... 85 2e-16
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su... 85 3e-16
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 85 3e-16
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n... 84 7e-16
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F... 83 9e-16
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O... 82 2e-15
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A... 81 6e-15
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri... 79 2e-14
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 75 3e-13
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 75 4e-13
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 71 4e-12
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B... 69 2e-11
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine... 69 3e-11
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B... 66 1e-10
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2... 66 1e-10
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido... 64 4e-10
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact... 64 6e-10
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp... 64 8e-10
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther... 64 8e-10
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 63 1e-09
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c... 63 1e-09
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,... 62 2e-09
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 61 4e-09
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit... 61 4e-09
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s... 60 7e-09
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 59 2e-08
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy... 58 3e-08
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu... 58 5e-08
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ... 58 5e-08
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 57 9e-08
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=... 57 9e-08
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put... 56 2e-07
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase... 55 4e-07
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy... 55 4e-07
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul... 55 4e-07
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 54 5e-07
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac... 54 6e-07
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;... 53 1e-06
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;... 52 2e-06
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 51 4e-06
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 51 6e-06
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale... 50 8e-06
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ... 50 8e-06
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 49 2e-05
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n... 48 4e-05
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf... 48 4e-05
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;... 48 4e-05
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 48 4e-05
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 47 7e-05
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 47 9e-05
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 46 2e-04
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 46 2e-04
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 45 3e-04
UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 43 0.001
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult... 43 0.001
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ... 41 0.005
UniRef50_Q8ZYU4 Cluster: Oxidoreductase, truncation; n=4; Pyroba... 41 0.005
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe... 41 0.006
UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11; Alphaproteobacte... 40 0.008
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 40 0.014
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 40 0.014
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su... 38 0.033
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 38 0.058
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 38 0.058
UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-lik... 37 0.077
UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain 49... 37 0.10
UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 36 0.13
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative... 35 0.31
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi... 35 0.31
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 34 0.54
UniRef50_A5UT72 Cluster: Putative uncharacterized protein precur... 34 0.71
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 34 0.71
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 34 0.71
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3... 33 0.94
UniRef50_A0LF84 Cluster: Pyruvate ferredoxin/flavodoxin oxidored... 33 1.2
UniRef50_Q93LB1 Cluster: Putative DNA-binding protein; n=1; Bifi... 33 1.7
UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus... 33 1.7
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;... 33 1.7
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ... 33 1.7
UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4; Methano... 32 2.2
UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6; Me... 32 2.2
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10... 32 2.9
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs... 32 2.9
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 31 5.0
UniRef50_A5G076 Cluster: Uncharacterized protein-like protein; n... 30 8.8
UniRef50_Q2HEZ5 Cluster: Putative uncharacterized protein; n=1; ... 30 8.8
>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor; n=305;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor - Homo
sapiens (Human)
Length = 463
Score = 112 bits (269), Expect = 2e-24
Identities = 52/75 (69%), Positives = 60/75 (80%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
++LT NRIW RT DIGVVTA++ALNYGFSGVMLRGSGI+WDLRKT PYD Y VE DVP
Sbjct: 260 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVP 319
Query: 193 IGTXGXXYXRXYVSR 237
+G+ G Y R Y+ R
Sbjct: 320 VGSRGDCYDR-YLCR 333
>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 498
Score = 99 bits (238), Expect = 1e-20
Identities = 48/75 (64%), Positives = 55/75 (73%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+V+T NRIW RT IG VTAQ+AL+YGFSGVMLRGSGI WD+RK PYD Y VE DVP
Sbjct: 295 EVVTGNRIWKGRTIGIGKVTAQEALDYGFSGVMLRGSGIPWDIRKVAPYDAYDQVEFDVP 354
Query: 193 IGTXGXXYXRXYVSR 237
+G G Y R Y+ R
Sbjct: 355 VGKNGDCYDR-YLCR 368
>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 394
Score = 95.1 bits (226), Expect = 3e-19
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
++LT NRIW QR DIG VTAQ A ++GFSGVMLRG G+ WDLR+ PYD Y ++ DVP
Sbjct: 191 EMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDVP 250
Query: 193 IGTXGXXYXR 222
+GT G Y R
Sbjct: 251 VGTRGDCYDR 260
>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
subunit 7 - Leptospirillum sp. Group II UBA
Length = 423
Score = 91.5 bits (217), Expect = 3e-18
Identities = 40/72 (55%), Positives = 51/72 (70%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+L TNRIW+ RTK+I V+T +DA+N+G SG LRGSGI +DLRK PY Y VE DVP+
Sbjct: 221 LLETNRIWLARTKNIAVITGEDAINFGLSGPTLRGSGIPYDLRKFEPYGAYDQVEFDVPV 280
Query: 196 GTXGXXYXRXYV 231
G G Y R ++
Sbjct: 281 GQNGDIYDRYWI 292
>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
n=24; Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase subunit D - Campylobacter jejuni
Length = 408
Score = 85.4 bits (202), Expect = 2e-16
Identities = 41/73 (56%), Positives = 50/73 (68%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D+L NRIW RT+++GVVT + ALN+G +GVMLRGSGIK+D+RK PY Y VE VP
Sbjct: 203 DLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVP 262
Query: 193 IGTXGXXYXRXYV 231
T G Y R V
Sbjct: 263 YATQGDSYARYKV 275
>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO4 subunit - Xylella fastidiosa
Length = 435
Score = 85.0 bits (201), Expect = 3e-16
Identities = 39/74 (52%), Positives = 49/74 (66%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT NRIW QRT +GV+ A +G +GVMLRGSG+ WDLRK PY Y V+ D+P+
Sbjct: 231 LLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGSGVAWDLRKKQPYAKYDAVDFDIPL 290
Query: 196 GTXGXXYXRXYVSR 237
GT G Y R Y+ R
Sbjct: 291 GTCGDCYDR-YLCR 303
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 85.0 bits (201), Expect = 3e-16
Identities = 34/72 (47%), Positives = 51/72 (70%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT NRIW++R K++G+++ +DA +G +G ++RGSGI +D+RK PYD Y VE D+P+
Sbjct: 402 ILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIRGSGIPYDIRKFEPYDAYDEVEFDIPV 461
Query: 196 GTXGXXYXRXYV 231
G G Y R V
Sbjct: 462 GEIGDCYDRYLV 473
>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
n=12; Bacteroidetes/Chlorobi group|Rep: NADH
dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
Length = 368
Score = 83.8 bits (198), Expect = 7e-16
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT N I+V+RT DIG++ A A+NYG+SG MLRGSG+KWDLR+ PY YP ++ DVP+
Sbjct: 182 LLTENEIFVKRTYDIGIMPADVAINYGWSGPMLRGSGVKWDLRRNDPYSVYPELDFDVPV 241
>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
Firmicutes|Rep: NADH dehydrogenase I subunit D -
Symbiobacterium thermophilum
Length = 384
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++T NRI+ RTK+IGV+TA+ A+ Y SG +LRGSG+KWDLRK PY Y E D+P+
Sbjct: 204 LVTGNRIFQYRTKNIGVLTAEQAIAYSCSGAVLRGSGVKWDLRKNLPYAIYDRFEFDIPV 263
Query: 196 GTXGXXYXRXYV 231
G G + R +V
Sbjct: 264 GQNGDSFDRWWV 275
>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
subunit - Opitutaceae bacterium TAV2
Length = 419
Score = 82.2 bits (194), Expect = 2e-15
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT NRI++ RT+ +GV++ +DAL+YG +G LRGSG+ +D+RK PY Y E DVP+
Sbjct: 216 LLTRNRIFIDRTEGVGVISREDALSYGLTGPNLRGSGVPFDIRKDKPYCGYENYEFDVPV 275
Query: 196 GTXGXXYXRXYVSRSXD 246
GT G Y R Y+ R +
Sbjct: 276 GTKGDSYDR-YLCRGEE 291
>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
Acidobacteria bacterium (strain Ellin345)
Length = 381
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT NRIW+QRTK IG++ A D G +G +LR +G+KWDLRK PY Y V+ DVP
Sbjct: 204 LLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAAYDQVDFDVPT 263
Query: 196 GTXGXXYXRXYV 231
G G + R V
Sbjct: 264 GENGDTFDRYMV 275
>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
extorquens PA1|Rep: NADH dehydrogenase -
Methylobacterium extorquens PA1
Length = 447
Score = 79.0 bits (186), Expect = 2e-14
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ NRI+ QR DIG+V+ +A+ +GFSGVM+RGSGI WDLRK+ PY+ Y +E D+P
Sbjct: 210 NLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVRGSGIPWDLRKSQPYELYEEMEFDIP 269
Query: 193 IG 198
G
Sbjct: 270 RG 271
>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 403
Score = 74.9 bits (176), Expect = 3e-13
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+L NRI++ RT+D+G ++ + ALN+G++G +LR +G K D+RK +PY Y ++ +VP+
Sbjct: 201 LLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYLAYADLDFEVPV 260
Query: 196 GTXGXXYXRXYV 231
G G Y R YV
Sbjct: 261 GIKGDNYDRYYV 272
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 74.5 bits (175), Expect = 4e-13
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ N+I++QRTK++ V+A DA+ +G++G MLR G+ DLRK PY Y ++ DVP
Sbjct: 357 NMVIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLRACGVNLDLRKAQPYYGYDALDFDVP 416
Query: 193 IGTXGXXYXRXYV 231
+GT G Y R V
Sbjct: 417 VGTNGDIYDRYLV 429
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 71.3 bits (167), Expect = 4e-12
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++ NRI++ R ++I + A DAL+YGFSG LR SG+ +DLRK PY Y + VP+
Sbjct: 359 LIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDSFDFSVPV 418
Query: 196 GTXGXXYXRXYV 231
G+ G Y R +V
Sbjct: 419 GSEGDIYDRMFV 430
>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Leptospira interrogans
Length = 405
Score = 68.9 bits (161), Expect = 2e-11
Identities = 30/72 (41%), Positives = 47/72 (65%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+L N+I++ RT+ IG ++A++A+ YG++G LR +G+ WD+RK PY Y V+ D+PI
Sbjct: 203 LLLKNKIFLGRTEGIGGISAENAIAYGYTGPNLRAAGVDWDVRKDEPYLFYDKVDFDIPI 262
Query: 196 GTXGXXYXRXYV 231
G G R V
Sbjct: 263 GEDGSVLHRSLV 274
>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
Cystobacterineae|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 431
Score = 68.5 bits (160), Expect = 3e-11
Identities = 30/69 (43%), Positives = 44/69 (63%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+++ NRI++ RT+ GVV DA+ GF+G LR SG +DLRK PY Y ++ D+P+
Sbjct: 229 LVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRIDFDIPV 288
Query: 196 GTXGXXYXR 222
GT G + R
Sbjct: 289 GTNGDNFDR 297
>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Salinibacter ruber (strain DSM 13855)
Length = 451
Score = 66.5 bits (155), Expect = 1e-10
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+L NRIWV+R K +G VT ++AL G +G LRGSG+ +D+R+ PY Y V+ +P+
Sbjct: 248 LLNKNRIWVERNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVDFTIPV 307
Query: 196 GTXGXXYXRXYV 231
G R ++
Sbjct: 308 REEGDCLARYFL 319
>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
2 - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 404
Score = 66.5 bits (155), Expect = 1e-10
Identities = 27/69 (39%), Positives = 44/69 (63%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++ NR+++ RT+ +GV++A DA++ G SG LR SG+ WD+R+ PY+ Y ++ DV
Sbjct: 201 LIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYDRLDFDVIT 260
Query: 196 GTXGXXYXR 222
G Y R
Sbjct: 261 REEGDCYSR 269
>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
oxidoreductase, D subunit; n=7; Bacteria|Rep:
Proton-translocating NADH-quinone oxidoreductase, D
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 367
Score = 64.5 bits (150), Expect = 4e-10
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+++TN I + RTK +GV+ A+N +G +LR SGI WD+R+ PY Y E D+PI
Sbjct: 190 LISTNEIVLIRTKGVGVLKRDLAINSSAAGPVLRASGINWDIRRNDPYSIYNRFEFDIPI 249
Query: 196 GTXGXXYXRXYV 231
G Y R +
Sbjct: 250 AKNGDTYDRYMI 261
>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
Anaeromyxobacter|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 381
Score = 64.1 bits (149), Expect = 6e-10
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++T N I+ +R ++ ++ + A++YG G LRGSG+ WD+R+ PY YP + +VP+
Sbjct: 197 LITFNEIYKKRLANVATISREQAISYGLVGPNLRGSGVDWDIRRDLPYGAYPNFQFEVPV 256
Query: 196 -----GTXGXXYXRXYV 231
GT G + R YV
Sbjct: 257 GKGWAGTVGDCFDRYYV 273
>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
Length = 405
Score = 63.7 bits (148), Expect = 8e-10
Identities = 26/70 (37%), Positives = 45/70 (64%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ NR+++ R +++G +T +DA+ G SG LR SGI WD+R+ PY+ Y ++ +V
Sbjct: 200 NLVGNNRVFLARVENVGNITGEDAIALGLSGPCLRASGIDWDIRRDAPYEIYDRLDFNVI 259
Query: 193 IGTXGXXYXR 222
+ T G Y R
Sbjct: 260 VRTDGDCYDR 269
>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
Thermoplasma volcanium
Length = 369
Score = 63.7 bits (148), Expect = 8e-10
Identities = 27/73 (36%), Positives = 45/73 (61%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
++ N I++ RTK +G+++ + A++YG +G MLR SG+++D+RK PY Y V D+P
Sbjct: 187 NLFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIP 246
Query: 193 IGTXGXXYXRXYV 231
+ G R V
Sbjct: 247 VSFKGDNLARFLV 259
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 63.3 bits (147), Expect = 1e-09
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D+L N I+ +R K +GV+T +AL +G +G LR G++WDLRK PY+ Y +VP
Sbjct: 589 DLLKGNPIFRERLKGVGVITGDEALEWGITGPNLRACGVEWDLRKKIPYNGYQHFHFEVP 648
Query: 193 IGTXGXXYXRXYV 231
G + R V
Sbjct: 649 TEEGGDCWARYRV 661
>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
(class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
Length = 374
Score = 63.3 bits (147), Expect = 1e-09
Identities = 27/72 (37%), Positives = 45/72 (62%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+L N I + RT ++GV+ + A++Y +G +LR SGI +D+R+ PY Y ++ D+PI
Sbjct: 189 LLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFDIPI 248
Query: 196 GTXGXXYXRXYV 231
G+ G Y R +
Sbjct: 249 GSVGDVYDRFLI 260
>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
H); n=129; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain H, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 393
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++T N I+++R + +G++ ++A+N+G SG MLR SGI WDLRK Y+ Y E ++
Sbjct: 192 LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYDEFEWEIQW 251
Query: 196 GTXGXXYXRXYVSRS 240
G R V S
Sbjct: 252 QKQGDSLARYLVRLS 266
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 61.3 bits (142), Expect = 4e-09
Identities = 28/73 (38%), Positives = 44/73 (60%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D++T+N I+ RT + GV+ + A +YG +G + RGSG+ +D+R+ PY YP ++ DV
Sbjct: 378 DLITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVV 437
Query: 193 IGTXGXXYXRXYV 231
G Y R V
Sbjct: 438 TEDGGDNYSRLLV 450
>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit D - Cenarchaeum symbiosum
Length = 379
Score = 61.3 bits (142), Expect = 4e-09
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D+ N I RT GV++ QDA+ +G +G +LR SG+ +DLRK PYD Y ++ + P
Sbjct: 198 DIFYDNPILKARTVGTGVLSRQDAVRFGTTGSVLRASGVDFDLRKREPYDAYEEMDFETP 257
Query: 193 IGTXGXXYXRXYV 231
+ G Y R V
Sbjct: 258 VLKEGDSYARSKV 270
>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
subunit; n=2; Archaea|Rep: F420H2:quinone
oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
Length = 413
Score = 60.5 bits (140), Expect = 7e-09
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+ N + R +D+GV++ ++A+ YG G LR SG+++D+RK PY+ Y + ++P+
Sbjct: 220 IFINNPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYDDLTWEMPV 279
Query: 196 GTXGXXYXRXYV 231
G Y R V
Sbjct: 280 SDAGDGYARFLV 291
>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 375
Score = 58.8 bits (136), Expect = 2e-08
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +1
Query: 34 IWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXX 213
I+ +R +D+G + DA+ G +G LRGSG+K+DLRK YD Y ++ ++P G G
Sbjct: 194 IFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYGEIDFEIPSGEYGDS 253
Query: 214 YXRXYV 231
Y R V
Sbjct: 254 YDRALV 259
>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit D - Symbiobacterium thermophilum
Length = 404
Score = 58.4 bits (135), Expect = 3e-08
Identities = 28/74 (37%), Positives = 43/74 (58%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
DV+ N I+V R K + V+T + AL YG +G LR +G +D+RK +PY Y + VP
Sbjct: 200 DVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPYLGYENYDFKVP 259
Query: 193 IGTXGXXYXRXYVS 234
+ T G + R ++
Sbjct: 260 VYTDGDSWSRVAIT 273
>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
homolog - Aeropyrum pernix
Length = 414
Score = 57.6 bits (133), Expect = 5e-08
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+ N + R + +GV+ + A G G RGSGI +D+R HPYD YP ++ +VP+
Sbjct: 210 IFLNNPVIRSRLEGVGVIPKKAAAEMGIVGPNARGSGIDYDVRLVHPYDAYPEIDFEVPV 269
Query: 196 GTXGXXYXRXYV 231
G R YV
Sbjct: 270 FEEGDALARTYV 281
>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 409
Score = 57.6 bits (133), Expect = 5e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +1
Query: 34 IWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXX 213
I+ +R + +GV+ + A++ G +G LR SG+ +D+RK +PY Y DVP+G G
Sbjct: 213 IFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDV 272
Query: 214 YXRXYV 231
+ R V
Sbjct: 273 FDRMLV 278
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 56.8 bits (131), Expect = 9e-08
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++T + I+ RT++I V + AL++G +G LR +GI +D+RK PY Y + DVP+
Sbjct: 362 LMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMGYEDYDFDVPV 421
Query: 196 GTXGXXYXR 222
G G Y R
Sbjct: 422 GQDGDAYTR 430
>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
Bacteria|Rep: Carbon monoxide-induced hydrogenase -
Rhodospirillum rubrum
Length = 361
Score = 56.8 bits (131), Expect = 9e-08
Identities = 27/69 (39%), Positives = 41/69 (59%)
Frame = +1
Query: 25 TNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTX 204
TN V RT+ IGV++A D ++YG G + RGSG +D+RK PY Y ++ ++ +G
Sbjct: 189 TNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMALGEH 248
Query: 205 GXXYXRXYV 231
G + R V
Sbjct: 249 GDVWSRAMV 257
>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
49 kDa subunit, putative - Thermotoga maritima
Length = 368
Score = 55.6 bits (128), Expect = 2e-07
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ NRI R + ++T + A+ G +GV LR +G+++D+RK PY Y VE +VP
Sbjct: 184 NLIFKNRIVHSRLRGRLILTREQAVEMGVTGVGLRATGVEYDIRKVDPYLFYDRVEFEVP 243
Query: 193 IGTXGXXYXRXYV 231
T G + R Y+
Sbjct: 244 TATDGDAFSRVYL 256
>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
chain C/D; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
C/D - Protochlamydia amoebophila (strain UWE25)
Length = 402
Score = 54.8 bits (126), Expect = 4e-07
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+LT N +W +R + + V+ + Y +G +LR SGI +D+RK +PY Y D+P
Sbjct: 200 LLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYENYNFDIPT 259
Query: 196 GTXGXXYXRXYV 231
G Y R V
Sbjct: 260 HIDGDSYARYLV 271
>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: NADH dehydrogenase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 358
Score = 54.8 bits (126), Expect = 4e-07
Identities = 22/65 (33%), Positives = 42/65 (64%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D++ N I+++RT+ I +T ++A+ G +G LR +G+ +D+R+ +PY YP ++ +V
Sbjct: 180 DLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVV 239
Query: 193 IGTXG 207
T G
Sbjct: 240 TDTAG 244
>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
marina DSM 3645|Rep: NADH dehydrogenase -
Blastopirellula marina DSM 3645
Length = 418
Score = 54.8 bits (126), Expect = 4e-07
Identities = 23/44 (52%), Positives = 37/44 (84%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRK 147
+LT N I+++RT +IGV++A+ A++YG SG +LRGSG+ +DLR+
Sbjct: 217 LLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRR 260
>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Paramecium tetraurelia
Length = 400
Score = 54.4 bits (125), Expect = 5e-07
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKT--HPYDXYPFVEXD 186
++LT N+IW QR +IG ++ +D L++G +GVM R +GIK DLR Y Y ++
Sbjct: 186 NILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNFR 245
Query: 187 VPIGTXGXXYXRXYV 231
G G Y R +
Sbjct: 246 SYTGQAGDSYDRFLI 260
>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
Deltaproteobacteria|Rep: NADH dehydrogenase -
Desulfuromonas acetoxidans DSM 684
Length = 374
Score = 54.0 bits (124), Expect = 6e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ N I +R K IG T + YG +G +LRG+GI +DLR+ PY YP + ++P
Sbjct: 195 ELVNGNIILQKRLKGIGEYTPELCARYGVTGPLLRGAGISYDLRRAEPYSVYPEFDFEIP 254
Query: 193 IGTXG 207
G
Sbjct: 255 TDPGG 259
>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
oxidoreductase subunit - Beggiatoa sp. PS
Length = 380
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D+ N ++ +R + IG +T + AL +G +G LR G+ +D+R+ PY Y ++ D+P
Sbjct: 197 DLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRNDPYLVYEQLDFDIP 256
Query: 193 IGTXGXXYXRXYVSRS 240
T G R V RS
Sbjct: 257 TETGGDVLDRIRVRRS 272
>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
Methanosarcina mazei (Methanosarcina frisia)
Length = 374
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +1
Query: 1 RHEXDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
R ++ ++ I+ +RT IGV+TA +A + G SG +LR +G+ +D+RK PY Y ++
Sbjct: 186 RDYEEMFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLRATGVPFDIRKNEPYLVYRDLD 245
Query: 181 XDVPIGTXGXXYXRXYV 231
V T G + R V
Sbjct: 246 FKVCTETAGDCFARVQV 262
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 51.2 bits (117), Expect = 4e-06
Identities = 29/72 (40%), Positives = 38/72 (52%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
VL+T+ + V R KD+GV+ A G + RGS IK D RK HPY Y V+ VP+
Sbjct: 362 VLSTSTL-VSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVPV 420
Query: 196 GTXGXXYXRXYV 231
+ G R V
Sbjct: 421 HSEGDVLARLSV 432
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 50.8 bits (116), Expect = 6e-06
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXY-PFVEXDVPIGTXGXXYXR 222
R + + V+A+DA+ YG+SG LR SG+ WDLR PY Y ++ + +G+ G R
Sbjct: 362 RAEGVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDR 421
Query: 223 XYV 231
V
Sbjct: 422 MLV 424
>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
Actinomycetales|Rep: NADH dehydrogenase - Salinispora
tropica CNB-440
Length = 388
Score = 50.4 bits (115), Expect = 8e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
+++ N I++ RT +GV++A A YG SG + R SG+ DLR+ PY Y ++ V
Sbjct: 208 NLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQLDVPVV 267
Query: 193 IGTXGXXYXRXYV 231
T G + R V
Sbjct: 268 TRTAGDCHSRFEV 280
>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
D - Mycobacterium bovis
Length = 440
Score = 50.4 bits (115), Expect = 8e-06
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 1 RHEXDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
R ++L N IW RT+ +G + + G +G +LR +G+ DLRK+ PY Y E
Sbjct: 217 REMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYE 276
Query: 181 XDV 189
DV
Sbjct: 277 FDV 279
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 49.2 bits (112), Expect = 2e-05
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 4 HEX-DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
HE D+ T N I R K +GV++ +DA+++G +G R SG D+RK PY Y V+
Sbjct: 356 HEYHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRIPYGVYDKVD 415
Query: 181 XDVPIGTXGXXYXRXYV 231
+ T G + R V
Sbjct: 416 FQEIVYTEGDCFARYLV 432
>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
D - Pyrococcus abyssi
Length = 394
Score = 48.0 bits (109), Expect = 4e-05
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +1
Query: 28 NRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXG 207
N I +R + IGV+ + AL G +G LR +G+ +D+RK PY YP ++ +VP G
Sbjct: 214 NYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLREG 273
Query: 208 XXYXRXYVSR 237
R V R
Sbjct: 274 DALARALVRR 283
>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
Sulfolobus solfataricus
Length = 410
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
R +++GV++ ++A+ +G G LR SG+ +D+RK PY Y ++ ++P+ G R
Sbjct: 218 RLENVGVMSRENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPVYKEGDGLARG 277
Query: 226 YV 231
V
Sbjct: 278 LV 279
>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 430
Score = 48.0 bits (109), Expect = 4e-05
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
V+ N + R KD+G ++ +DA +G RGSGI+WD R+ + Y Y E +V +
Sbjct: 231 VVVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIEWDARRAYKYGVYDEFEWEVCV 290
Query: 196 GTXGXXYXRXYV 231
G R V
Sbjct: 291 EDGGDALARTMV 302
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 48.0 bits (109), Expect = 4e-05
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXY 216
+ RTK IG + DA Y G + R +G +D+R+ PY YP VE +VP G Y
Sbjct: 342 ISRTKGIGRYSLDDARKYCAVGPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVY 400
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 47.2 bits (107), Expect = 7e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 28 NRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIG 198
N I R++ + A++AL +G +G LR +GI +D+RK PY Y + +VP+G
Sbjct: 401 NTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPVG 457
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 46.8 bits (106), Expect = 9e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDV 189
D + +N + + R K++GV+ ++A+ G G RGSG + D+RK PY Y ++ D+
Sbjct: 292 DEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDI 350
>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Desulfitobacterium hafniense|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Desulfitobacterium hafniense (strain DCB-2)
Length = 370
Score = 46.0 bits (104), Expect = 2e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 28 NRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
N I R K +G+++ + A N +G LR SG+++D+RK PY Y + +VP+
Sbjct: 197 NEIAQARMKKVGILSKEVAENLCITGPALRASGVQYDVRKAEPYGIYDRFDFEVPV 252
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 45.6 bits (103), Expect = 2e-04
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +1
Query: 1 RHEXDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
+H D++T+ V+R G+++ DA G + RGSG+ D+R+ +PY Y V
Sbjct: 345 KHLSDLITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVY 404
Query: 181 XDVPIGTXGXXYXRXYV 231
VP+ G R V
Sbjct: 405 FKVPVYNEGDNLARLLV 421
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXD 186
+ N R K++G++T ++ YG G++ R SG++ D+R PY Y VE +
Sbjct: 361 IFVNNPTMKMRAKEVGILTDEEVEAYGLCGIVARASGVRTDIRIDEPYAAYDQVEME 417
>UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Roseiflexus|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa - Roseiflexus sp. RS-1
Length = 358
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D L R + RT ++GV+ A +G G + R SGI+ D+R PY Y ++
Sbjct: 183 DRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQPI 242
Query: 193 IGTXGXXYXR 222
I G Y R
Sbjct: 243 IQEGGDVYAR 252
>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
uncultured methanogenic archaeon RC-I|Rep: Ech
hydrogenase, subunit E - Uncultured methanogenic
archaeon RC-I
Length = 359
Score = 43.2 bits (97), Expect = 0.001
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXY 168
D++ +R R K +G+++ Q AL+Y G + RGSGI +D+R PY Y
Sbjct: 182 DMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLY 233
>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
Length = 391
Score = 41.1 bits (92), Expect = 0.005
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
DVL N ++ +R+ +GV+ YG +G R +G+ D+R PY YP + +
Sbjct: 209 DVLFHNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAI 268
Query: 193 IGTXGXXYXR 222
+G Y R
Sbjct: 269 VGKDSDIYTR 278
>UniRef50_Q8ZYU4 Cluster: Oxidoreductase, truncation; n=4;
Pyrobaculum|Rep: Oxidoreductase, truncation -
Pyrobaculum aerophilum
Length = 167
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
R +DIGV+ A+ A G G R SGI +D R+ PYD Y + + G R
Sbjct: 5 RLEDIGVLDAKAATELGVVGPFARASGIDFDARRDMPYDAYALFKITPAVEKGGDALART 64
Query: 226 YV 231
V
Sbjct: 65 MV 66
>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
pendens (strain Hrk 5)
Length = 404
Score = 40.7 bits (91), Expect = 0.006
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYX 219
V R + +GV+ +A G G LR SG+K+D R Y Y +E +VP G
Sbjct: 211 VARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAYKDLEFEVPTREEGDCMA 270
Query: 220 RXYV 231
R V
Sbjct: 271 RMLV 274
>UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11;
Alphaproteobacteria|Rep: Blr6343 protein -
Bradyrhizobium japonicum
Length = 503
Score = 40.3 bits (90), Expect = 0.008
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
RT D GV+ A A Y G + R SG +D R+T Y Y + DVP+ G R
Sbjct: 339 RTVDTGVLKAALARQYAVGGYVGRASGRSFDARRTLVYAPYDALRFDVPVLNEGDVNARV 398
Query: 226 YV 231
++
Sbjct: 399 WI 400
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 39.5 bits (88), Expect = 0.014
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
+ R + G ++ + A G GV R SGI D R HPY Y V+ D+P+
Sbjct: 363 LDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPV 414
>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 406
Score = 39.5 bits (88), Expect = 0.014
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYX 219
++R D+GV+ D Y F G R SG+K D+R + Y+ Y + ++ G +
Sbjct: 202 LKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMVTRNEGDSWA 261
Query: 220 RXYV 231
R V
Sbjct: 262 RMIV 265
>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
tengcongensis
Length = 360
Score = 38.3 bits (85), Expect = 0.033
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPI 195
++ N +RT IGV++ ++A G G LRGSG+ D R T Y Y +++ + +
Sbjct: 186 IVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTR-TLGYAAYKYLDFEPVV 244
Query: 196 GTXGXXYXRXYV 231
G Y R V
Sbjct: 245 EKDGDTYARTLV 256
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 37.5 bits (83), Expect = 0.058
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 16 VLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
++ N +++ R + G++ A++ G R SG+K D+RK PY Y ++ +VP
Sbjct: 354 IIKNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVP 412
>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Nyctotherus ovalis
Length = 412
Score = 37.5 bits (83), Expect = 0.058
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 19 LTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLR--KTHPYDXYPFVEXDVP 192
L NR+W R IGVV+ + + + SG + R +G++ D+R + + Y Y + +
Sbjct: 211 LYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYASLTLRIF 270
Query: 193 IGTXGXXYXRXYV 231
+G G + R +
Sbjct: 271 LGISGDSFDRFII 283
>UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-like;
n=2; Chloroflexus|Rep: Ni Fe-hydrogenase III large
subunit-like - Chloroflexus aggregans DSM 9485
Length = 365
Score = 37.1 bits (82), Expect = 0.077
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 31 RIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGX 210
R V R DIGV+T + A +G +G + R S I D R PY Y + + + G
Sbjct: 186 RTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPALVVEQGGD 245
Query: 211 XYXRXYV 231
+ R V
Sbjct: 246 VHARAVV 252
>UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain
49kDa; n=11; Bacteria|Rep: NADH-ubiquinone
oxidoreductase chain 49kDa - Anaeromyxobacter sp.
Fw109-5
Length = 515
Score = 36.7 bits (81), Expect = 0.10
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
R + G V+ + A G G R SG+ D+R+ H + Y FV V G + R
Sbjct: 350 RLEGTGTVSRETARALGLVGPAARASGVDRDVRRDHAFGIYRFVHVPVVTADTGDVFARA 409
Query: 226 YV 231
++
Sbjct: 410 WI 411
>UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidiphilium cryptum JF-5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidiphilium cryptum (strain JF-5)
Length = 476
Score = 36.3 bits (80), Expect = 0.13
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXY--PFVEXDVPIGTXGXXYX 219
R GV+ + A + G +G + R SG+ DLR+ H Y Y P + V GT G +
Sbjct: 310 RLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAVATGTDGDAHA 369
Query: 220 RXYV 231
R V
Sbjct: 370 RARV 373
>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
hydrogenase, subunit EchE, putative - Caminibacter
mediatlanticus TB-2
Length = 363
Score = 35.1 bits (77), Expect = 0.31
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D T+ + +TK I ++ A Y G + R SG+ D RK PY Y + +V
Sbjct: 188 DFYDTDYTFGLKTKGISYISYDMAKEYNAVGPIARASGVDTDARKEFPYLPYDEIGFEVQ 247
Query: 193 IGTXGXXYXRXYV 231
+ G + R V
Sbjct: 248 TMSEGDVWARNMV 260
>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 409
Score = 35.1 bits (77), Expect = 0.31
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDV 189
R KD G++T + AL G R SG+ D+R PY Y ++ D+
Sbjct: 199 RCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDI 246
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 34.3 bits (75), Expect = 0.54
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
D++ + RT+ G + + A++ G R SG+ D+R+ HPY Y + V
Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407
Query: 193 IGTXGXXYXRXYV 231
I G R V
Sbjct: 408 IRKEGDVNARMQV 420
>UniRef50_A5UT72 Cluster: Putative uncharacterized protein
precursor; n=1; Roseiflexus sp. RS-1|Rep: Putative
uncharacterized protein precursor - Roseiflexus sp. RS-1
Length = 156
Score = 33.9 bits (74), Expect = 0.71
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 152 CVLRRSHLMPEPRSITPLNP*LSASCAVTTPMSLVRCTQILLVVXTSSS 6
C +RRSHL P +S P SAS +T P S V T L+ S++
Sbjct: 93 CTMRRSHLQPWIKSAGPQRMIPSASTIITIPDSSVSTTSTFLLCAQSAT 141
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 33.9 bits (74), Expect = 0.71
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDV 189
RT +G+ G G + RG G+ D R+ HPY Y V+ V
Sbjct: 363 RTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKV 410
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 33.9 bits (74), Expect = 0.71
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 13 DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDV 189
DVL + QRT IG + + A ++ G M+R SG D R HP+ Y + +V
Sbjct: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419
>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
- Dehalococcoides sp. (strain CBDB1)
Length = 526
Score = 33.5 bits (73), Expect = 0.94
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYX 219
V R + G+V + + +GV R SG D R PY YP + +P+ G
Sbjct: 362 VDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKLPVLPEGDVMA 421
Query: 220 RXYVSRS 240
R V S
Sbjct: 422 RFRVRLS 428
>UniRef50_A0LF84 Cluster: Pyruvate ferredoxin/flavodoxin
oxidoreductase; n=1; Syntrophobacter fumaroxidans
MPOB|Rep: Pyruvate ferredoxin/flavodoxin oxidoreductase
- Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 175
Score = 33.1 bits (72), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 120 APQHHTAESVVERVLRSDHADVLGPLHPDPVGGEXVXLVP 1
AP+ + S V ++R HADVL LHPD + L P
Sbjct: 54 APREQSGTSPVSPLVRPGHADVLLALHPDALAAHGFFLRP 93
>UniRef50_Q93LB1 Cluster: Putative DNA-binding protein; n=1;
Bifidobacterium animalis|Rep: Putative DNA-binding
protein - Bifidobacterium animalis subsp. lactis
(Bifidobacterium lactis)
Length = 299
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 3 ARGXRXHHQQDLGAADQGHRRGHCAGRAQLRIQ 101
A G R HQ L A + HR+ C GR LR+Q
Sbjct: 122 ATGRRPRHQGALPPATRRHRQARCQGRQALRLQ 154
>UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Hydrogenase subunit -
Mariprofundus ferrooxydans PV-1
Length = 532
Score = 32.7 bits (71), Expect = 1.7
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 61 GVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRXYV 231
G+V +DA + G G + R SG D R Y Y +E +VP G G R +V
Sbjct: 372 GMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVPQGKLGDVATRVWV 428
>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
n=4; Thermococcaceae|Rep: Mbh12 membrane bound
hydrogenase alpha - Pyrococcus furiosus
Length = 427
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYP 171
R +D+ VV + A+ G G RGSGIK D R + YP
Sbjct: 199 RLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYP 240
>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
organisms|Rep: NADH dehydrogenase - Methanoregula boonei
(strain 6A8)
Length = 359
Score = 32.7 bits (71), Expect = 1.7
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
R K +G++ DA G G RGSGI DLR+T Y + + + G Y R
Sbjct: 196 RLKGVGILQKGDAYTLGAVGPTARGSGIGIDLRQT-GYAAFGKINFKPVVEQSGDCYARC 254
Query: 226 YV 231
V
Sbjct: 255 AV 256
>UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4;
Methanobacteriaceae|Rep: Hydrogenase large subunit -
Methanobacterium thermoformicicum
Length = 376
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 22 TTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHP-YDXYPF 174
T++ + + R + ++ +DAL +G LR +G+++DLR P YD + F
Sbjct: 195 TSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLRTEMPCYDPFEF 246
>UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6;
Methanococcales|Rep: Uncharacterized protein MJ1027 -
Methanococcus jannaschii
Length = 377
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 40 VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYX 219
+ R KD+GV+ + A G RGSGI D+RK Y E + + G +
Sbjct: 199 MSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEEIVFDDGDVFS 258
Query: 220 RXYV 231
R V
Sbjct: 259 RLAV 262
>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
Mycobacterium tuberculosis
Length = 492
Score = 31.9 bits (69), Expect = 2.9
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 28 NRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIG 198
N + R V+ DA G G + R SG++ D R HP P E P G
Sbjct: 323 NSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAPDG 379
>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone) precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 409
Score = 31.9 bits (69), Expect = 2.9
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 1 RHEXDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
++ +V T R +G ++ +DAL G LR S + D+R+ PY Y ++
Sbjct: 180 KYYIEVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLD 239
Query: 181 XDVPIGTXGXXYXRXYV 231
V Y R V
Sbjct: 240 FRVITDDHCDVYGRTLV 256
>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
oxidoreductase - Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255)
Length = 561
Score = 31.1 bits (67), Expect = 5.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 46 RTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVPIGTXGXXYXRX 225
R +GV++ +DA G R SG+ D R +PY +P ++ G + R
Sbjct: 367 RMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGDIWART 426
Query: 226 YV 231
V
Sbjct: 427 LV 428
>UniRef50_A5G076 Cluster: Uncharacterized protein-like protein; n=2;
Proteobacteria|Rep: Uncharacterized protein-like protein
- Acidiphilium cryptum (strain JF-5)
Length = 447
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 39 GAADQGHRRGHCAGRAQ----LRIQRCDAAG 119
G AD+ HR CAGRA RI R DAAG
Sbjct: 347 GGADRSHRAAACAGRAAPAPGARIVRPDAAG 377
>UniRef50_Q2HEZ5 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 557
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 156 GMRLAQVPLDAGAPQHHTAESVVERVLRSDHADVLGPLHPDPV 28
GMR+ ++P GAPQ H H PLHP P+
Sbjct: 330 GMRIPEIPPFRGAPQQHQPAYTRPPPGFPPHPPQTQPLHPQPL 372
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,192,781
Number of Sequences: 1657284
Number of extensions: 3436622
Number of successful extensions: 10134
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 9998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10133
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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