Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   5.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   6.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   6.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    20   6.7  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    19   8.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   8.8  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    19   8.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 149 VLRRSHLMPEPRSITPLNP 93
           +L  SHLM   R   P NP
Sbjct: 36  LLMASHLMAASRLSLPTNP 54


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 131 LMPEPRSITPLNP*LSASCAVTTP 60
           L+P    ++P  P LS+  A+ TP
Sbjct: 229 LIPPHPGLSPHPPHLSSHPAIVTP 252


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 131 LMPEPRSITPLNP*LSASCAVTTP 60
           L+P    ++P  P LS+  A+ TP
Sbjct: 121 LIPPHPGLSPHPPHLSSHPAIVTP 144


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 51  GPLHPDP 31
           GP HPDP
Sbjct: 135 GPKHPDP 141


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 55  PWSAAPRSC 29
           P+SA PR+C
Sbjct: 443 PFSAGPRNC 451


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 151 HPYDXYPF 174
           HPY+ +PF
Sbjct: 160 HPYESWPF 167


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 55  PWSAAPRSC 29
           P+SA PR+C
Sbjct: 443 PFSAGPRNC 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,555
Number of Sequences: 336
Number of extensions: 776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)