Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   2.5  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   5.8  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   7.7  

>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 165 GVVGMRLAQVPLDAGAPQHHTAESVVERVLR 73
           G  GMRL    +   A Q  TAE +++R+L+
Sbjct: 71  GEYGMRLKDRSIRFHAKQLETAEQILKRILK 101


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 135 PLDAGAPQHHTAESVVERVLRSDHADVLGPLHPDPVGGEXVXL 7
           P +AG   + TA   V  V+R+ H+D+    +  P+ G  + L
Sbjct: 380 PHEAGKDSYDTALLFVYYVMRTKHSDIQRWQNVLPIHGSFLDL 422


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 73  AQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVE 180
           A+D L+ G      +G G   +   T+P + YP +E
Sbjct: 382 AEDQLDVGLYPNPYQGYGNASNTTTTNPLEPYPIIE 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 883,788
Number of Sequences: 5004
Number of extensions: 11390
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)