Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0728
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0168 + 14665778-14666503 28 1.7
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834... 28 1.7
11_01_0661 - 5387194-5388486 27 2.9
11_03_0051 + 9324941-9325192,9326033-9326305 26 5.1
10_06_0134 - 11090065-11091639 26 6.7
01_05_0426 + 22042215-22042595,22044846-22045688 26 6.7
12_02_0749 - 22758317-22760407 25 8.9
07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511... 25 8.9
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 25 8.9
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 25 8.9
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 25 8.9
>07_03_0168 + 14665778-14666503
Length = 241
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 3 ARGXRXHHQQDLGAADQGHRRGHCAGRA 86
ARG + +++ AAD+GHR+ AG A
Sbjct: 160 ARGRQRREEEEEEAADRGHRKTRQAGAA 187
>03_05_0947 -
29081007-29081047,29081670-29081958,29083044-29083424,
29083935-29084129
Length = 301
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 165 GVVGMRLAQVPLDAGAPQHHTAESVVERVLRSDHADVLGPLHPDPVGGEXVXL 7
G G +A PL GA + H V +RVL + +V+ P P GG V +
Sbjct: 78 GAYGRYVAGTPL--GADEGHIGILVTQRVLETMDTNVMWRTVPGPRGGGVVLI 128
>11_01_0661 - 5387194-5388486
Length = 430
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 114 QHHTAESVVERVLRSDHADVLGPLHPDP 31
QHH +E VLR AD+ HP P
Sbjct: 150 QHHIWRGALEEVLRDLRADMAALGHPSP 177
>11_03_0051 + 9324941-9325192,9326033-9326305
Length = 174
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 31 RIWVQRTKDIGVVTAQDALNYGF---SGVMLRGSGIK 132
R+WV++T+D+ A+DAL++ F M R +G K
Sbjct: 61 RVWVRQTRDV-AFDAEDALDHFFHKAPAAMQRTAGCK 96
>10_06_0134 - 11090065-11091639
Length = 524
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 171 GIGVVGMRLAQVPLDAGAPQHHTAESVVERVLRSDHADV 55
G+ +VGMRL +V G P A + +H D+
Sbjct: 309 GLDIVGMRLYKVAQSFGLPFEFNAVPAASHEVYLEHLDI 347
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 147 LAQVPLDAGAPQHHTAESVVERVLR-SDHADVLGPLHPDPVGG 22
+A LD G +H AE V DH + P +P P+GG
Sbjct: 191 MAFAGLDQGEVINHEAEDVHHDFFPLQDHPALNSPCNPHPLGG 233
>12_02_0749 - 22758317-22760407
Length = 696
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 153 MRLAQVPLDAGAPQHHTAESVVERVLRSDHAD 58
+R Q+P D P H T S+V V R D
Sbjct: 209 LRFQQMPADGCRPDHFTYNSLVHGVCRRGIVD 240
>07_01_1154 -
10850206-10850318,10850528-10850658,10850998-10851110,
10851221-10851307,10852873-10853000,10853132-10853210,
10853262-10853354,10854211-10854295,10855000-10855085,
10855183-10855375,10856891-10856970
Length = 395
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 195 YGHVXLDEGIGVVGMRLAQVPLDAG 121
+G L++G V+GM+ VPL AG
Sbjct: 208 FGSESLEKGTQVIGMKEMVVPLTAG 232
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 168 IGVVGMRLAQVPLDAGAPQHHTAESVVERVLRSD 67
+G+ G++ Q A P HTA + R L +D
Sbjct: 1577 VGIQGLQQQQTESSASGPAIHTAHMDIFRTLMAD 1610
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 66 HADVLGPLHPDPVG 25
HA +LGP HP P G
Sbjct: 335 HAQMLGPRHPPPQG 348
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 66 HADVLGPLHPDPVG 25
HA +LGP HP P G
Sbjct: 403 HAQMLGPRHPPPKG 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,803,849
Number of Sequences: 37544
Number of extensions: 103754
Number of successful extensions: 292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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