Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding pr...    23   2.6  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   3.4  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    22   4.5  

>AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding
          protein AgamOBP5 protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 46 AAPRSCWW 23
          AA RSCWW
Sbjct: 2  AASRSCWW 9


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 126 AGAPQHHTAESVVERVLRSDHADVLGPLHPDPVGG 22
           A +P    A      VL   H+DV GP+    +GG
Sbjct: 323 ARSPFPPVAGKTSTEVLDIIHSDVCGPMEETTLGG 357


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 99  ESVVERVLRSDHADVLGPLHPDPVGGEXVXL 7
           E    RVL   H D+ GP++    GG    L
Sbjct: 67  ERQTTRVLDLVHTDICGPMNTVTSGGSRYFL 97


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,280
Number of Sequences: 2352
Number of extensions: 3470
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19992474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)