Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily ass...   104   1e-23
Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...   103   2e-23
AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical ...    27   2.0  
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    27   2.0  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    27   2.0  
U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical pr...    26   4.5  

>U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 99 protein.
          Length = 474

 Score =  104 bits (250), Expect = 1e-23
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +1

Query: 13  DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
           D+LT NRIW  RT DIG+V+A DALN+GFSGVM+RGSGIK D+RKT PYD Y  +E DVP
Sbjct: 271 DMLTENRIWKARTVDIGLVSASDALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVP 330

Query: 193 IGTXGXXYXRXYVSR 237
           IGT G  Y R Y+ R
Sbjct: 331 IGTKGDCYDR-YLCR 344


>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score =  103 bits (248), Expect = 2e-23
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +1

Query: 13  DVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTHPYDXYPFVEXDVP 192
           D+LT NRIW  RT DIG+V+A DALN+GFSGVM+RGSGIK D+RKT PYD Y  +E DVP
Sbjct: 279 DMLTENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVP 338

Query: 193 IGTXGXXYXRXYVSR 237
           IGT G  Y R Y+ R
Sbjct: 339 IGTKGDCYDR-YLCR 352


>AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical
           protein C41H7.4 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 149 VLRRSHLMPEPRSITPLNP 93
           ++++ H+ P PR+ITPL P
Sbjct: 3   LIKQEHMHPPPRAITPLPP 21


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 149 VLRRSHLMPEPRSITPLNP 93
           ++++ H+ P PR+ITPL P
Sbjct: 3   LIKQEHMNPPPRTITPLPP 21


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 7   EXDVLTTNRIWVQRTKDIGVVTAQDALNYGF 99
           + DVL  NR+W++ +  +  + AQD  +Y F
Sbjct: 105 DMDVLVINRVWLRISPYLTFLAAQDYYHYFF 135


>U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical
           protein F08B4.5 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 149 VLRRSHLMPEPRSITPLNP*LSASCAV 69
           VL ++HL P P+ ITP+ P  S S ++
Sbjct: 432 VLSQAHLCPLPQHITPVLPDFSHSLSL 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,185,475
Number of Sequences: 27780
Number of extensions: 75065
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)