Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   2.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   3.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   4.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    20   7.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      20   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 13  DVLTTNRIWVQRTKDIGV 66
           D+ T   IW + TKDI +
Sbjct: 429 DIRTEELIWARGTKDIPI 446


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 13  DVLTTNRIWVQRTKDIGV 66
           D+ T   IW + TKDI +
Sbjct: 519 DIRTEELIWARGTKDIPI 536


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 143 RRSHLMPEPRSITPLNP*LSASCAVTTPMSLVRCT 39
           R+SH    P       P LS+S   T+PM+  + T
Sbjct: 305 RKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKST 339


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 55  PWSAAPRSC 29
           P+SA PRSC
Sbjct: 480 PFSAGPRSC 488


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 143 RRSHLMPEPRSITPLNP 93
           R + L+PEPR I  + P
Sbjct: 43  RSADLVPEPRYIIDVPP 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 94  GFSGVMLRGSGIKWDLRKTHPYDXYPF 174
           G++G+    SG+   L    P   YPF
Sbjct: 423 GYNGLPTVMSGLDESLSDVTPRKKYPF 449


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 143 RRSHLMPEPRSITPLNP 93
           R + L+PEPR I  + P
Sbjct: 43  RSADLVPEPRYIIDVPP 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,449
Number of Sequences: 438
Number of extensions: 1122
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)