Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0728
         (305 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00970.1 68417.m00131 protein kinase family protein contains ...    29   0.82 
At5g25265.1 68418.m02995 expressed protein                             27   3.3  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    25   7.6  

>At4g00970.1 68417.m00131 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 665

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 40  VQRTKDIGVVTAQDALNYGFSGVMLRGSGIKW 135
           VQ T D+      D L+YGFS       GI+W
Sbjct: 215 VQCTPDLSEKDCNDCLSYGFSNATKGRVGIRW 246


>At5g25265.1 68418.m02995 expressed protein
          Length = 366

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 147 LAQVPLDAGAPQHHTAESVVERVLRSDHADVLGPL-HPDPVGGEXV 13
           LA+  L A  P  +      E+VLR  + +V GP+ + DP+G   V
Sbjct: 180 LAKDGLGAAFPFFYIEPKKYEKVLRKYYPEVRGPVTNIDPIGNSPV 225


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 180 LDEGIGVVGMRLAQVPLDAGAPQHHTAESVVERVLRSDHADVLGPLHPD 34
           ++ G+G V M +A    +AGA     AE  V  +L  D + V G L  D
Sbjct: 259 VEGGMGSVSMAIANAAKEAGAEIFTNAE--VSEILTEDSSIVKGVLLAD 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,997,651
Number of Sequences: 28952
Number of extensions: 70074
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)