Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0725
         (436 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.3  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   2.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   2.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   5.1  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 178 NTYFYALTIYYLLHTVITELISFQAVNI 95
           N+Y YA T  +    +  + I+   VNI
Sbjct: 65  NSYMYAFTHIFFFFAICCDFIALIVVNI 92


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 301 LINRRYNIFLKITFLMWKLCR 363
           ++N +YN  L I    ++LC+
Sbjct: 18  IVNSKYNSILNIALKNFRLCK 38


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 301 LINRRYNIFLKITFLMWKLCR 363
           ++N +YN  L I    ++LC+
Sbjct: 18  IVNSKYNSILNIALKNFRLCK 38


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 368 KLRHSFHIKNVIL 330
           KLRH F +K ++L
Sbjct: 273 KLRHKFDLKTLVL 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,801
Number of Sequences: 336
Number of extensions: 1618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)