Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0725
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 3.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 3.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 3.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 3.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 3.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 3.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 3.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 3.8
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 25 5.0
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E+ +++CY + + SK
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSK 573
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E+ +++CY + + SK
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSK 573
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E+ +++CY + + SK
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSK 573
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 308 FINTII*ELSRHNIICYFVLLALSSK 231
FINTI+ E +++CY + + SK
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSK 573
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 163 HKNKCFEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDN 285
+ N + + +F+T ++S S ++ N K +I+ DN
Sbjct: 177 YNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDN 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,154
Number of Sequences: 5004
Number of extensions: 24106
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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