Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0725
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               27   8.8  
SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)                       27   8.8  

>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 275 HNIIC-YFVLLALSSKDRDIKLNVLKT*NKFTSK 177
           H +I  Y VLL   SK RDI + V+ +   FTS+
Sbjct: 38  HGVIKNYEVLLKRGSKQRDINIPVIASSGSFTSE 71


>SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)
          Length = 158

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 347 IKNVILRNILYLLFINTII*ELSRHNIICYFVLLALSSKDRDIKLN 210
           I N+I+ NI+ ++ IN II  +  +NII   ++  ++    +I +N
Sbjct: 20  INNIIINNII-IIIINNIIIIIIINNIIIIIIIKIINITINNITIN 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,029
Number of Sequences: 59808
Number of extensions: 155683
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)