Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0725
(436 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormon... 28 4.8
X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormon... 28 4.8
AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear rece... 28 4.8
AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear rece... 28 4.8
AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-P... 28 4.8
AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-P... 28 4.8
AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-P... 28 4.8
BT021217-1|AAX33365.1| 352|Drosophila melanogaster RH63642p pro... 28 6.3
AE014298-852|AAN09162.1| 352|Drosophila melanogaster CG3774-PB,... 28 6.3
AE014298-851|AAF46131.1| 352|Drosophila melanogaster CG3774-PA,... 28 6.3
>X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 391
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 232 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 275
>X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 865
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 706 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 749
>AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear
receptor E78B protein.
Length = 385
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 226 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 269
>AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear
receptor E78A protein.
Length = 866
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 707 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 750
>AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-PC,
isoform C protein.
Length = 338
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 179 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 222
>AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-PB,
isoform B protein.
Length = 392
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 233 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 276
>AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-PA,
isoform A protein.
Length = 862
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILCRDNSYIIVLIN 309
FEV L +V + N + + DD A T+ Q+ + D+ ++ L+N
Sbjct: 703 FEVWLTHVARLINEATLTLDDGAYLTRQQLEILYDSDFVNALLN 746
>BT021217-1|AAX33365.1| 352|Drosophila melanogaster RH63642p
protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 166 YALTIYYLLHTVITELISFQAVNI*TLRLXSLSPGSALILR--LKNIYTIILYLVP 5
+ L ++YLL V+T+ + AV + T SL+ + LR + +++II + P
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFRNP 302
>AE014298-852|AAN09162.1| 352|Drosophila melanogaster CG3774-PB,
isoform B protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 166 YALTIYYLLHTVITELISFQAVNI*TLRLXSLSPGSALILR--LKNIYTIILYLVP 5
+ L ++YLL V+T+ + AV + T SL+ + LR + +++II + P
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFRNP 302
>AE014298-851|AAF46131.1| 352|Drosophila melanogaster CG3774-PA,
isoform A protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 166 YALTIYYLLHTVITELISFQAVNI*TLRLXSLSPGSALILR--LKNIYTIILYLVP 5
+ L ++YLL V+T+ + AV + T SL+ + LR + +++II + P
Sbjct: 247 FPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFRNP 302
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,505
Number of Sequences: 53049
Number of extensions: 226068
Number of successful extensions: 300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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