Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0725
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical
           protein F48G7.13 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 178 FEVNLFYVFKTFNLISRSFDDNANKTK*QIILC--RDNSYIIVLIN--RRYNIFLKITFL 345
           F   LF   +  + I+R F   + K +  II C  RD   I VLI+   +   FLK+  L
Sbjct: 53  FNKKLFSKNRELSHIARIFQLTSLKIQDFIIFCSSRDFDKIHVLISLIEKSENFLKVKNL 112

Query: 346 MWKLC 360
            W+ C
Sbjct: 113 YWRCC 117


>Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical
           protein C17E4.1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 374 FHKLRHSFHIKNVILRNILYLLFINTII*ELSRHNIICYFVLLALSSKDRDIK 216
           FH  R SF  + V L N    +FI ++    +  N+  ++++L L +    IK
Sbjct: 10  FHSPRTSFFYRRVFLFNAFIPIFIKSL---QNGQNLFTHYIVLKLKNGQTKIK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,958,860
Number of Sequences: 27780
Number of extensions: 130836
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)