Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0724
(428 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 74 1e-12
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 72 4e-12
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 65 5e-10
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 64 9e-10
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 62 4e-09
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 62 4e-09
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 58 6e-08
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 57 1e-07
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 56 2e-07
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 55 7e-07
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 54 1e-06
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 52 7e-06
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 47 1e-04
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 47 2e-04
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 44 0.001
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 44 0.001
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 41 0.013
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 39 0.051
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 36 0.36
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 35 0.82
UniRef50_Q6C8A5 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 33 1.9
UniRef50_Q7S3K1 Cluster: Predicted protein; n=1; Neurospora cras... 33 2.5
UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;... 32 4.4
UniRef50_Q8RLB1 Cluster: Integrase; n=5; root|Rep: Integrase - S... 32 4.4
UniRef50_Q16AF0 Cluster: Putative uncharacterized protein; n=1; ... 32 4.4
UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA... 32 4.4
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 32 4.4
UniRef50_UPI00015A6D74 Cluster: Na(+)/H(+) exchange regulatory c... 32 5.8
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 74.1 bits (174), Expect = 1e-12
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 2e-11
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 72.1 bits (169), Expect = 4e-12
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 76 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
Score = 64.5 bits (150), Expect = 9e-10
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKV 118
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 65.3 bits (152), Expect = 5e-10
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HRRV
Sbjct: 175 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRV 232
Score = 54.0 bits (124), Expect = 1e-06
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 109 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS E
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVE 174
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 64.5 bits (150), Expect = 9e-10
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +1
Query: 91 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
ARP VSVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNR 55
Score = 43.2 bits (97), Expect = 0.002
Identities = 26/65 (40%), Positives = 30/65 (46%)
Frame = +3
Query: 234 ALLREQGAGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRA 413
A+ R G H SA SWGTGRAVA GGGT S PTK +R
Sbjct: 52 AVNRLSGMNH--SAHSWGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRR 109
Query: 414 RHRRV 428
HR++
Sbjct: 110 WHRKI 114
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 62.5 bits (145), Expect = 4e-09
Identities = 29/58 (50%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA GGGTHR+ PTK WR H+++
Sbjct: 34 AGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKI 91
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 62.5 bits (145), Expect = 4e-09
Identities = 29/58 (50%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA GGGTHR+ PTK WR H+++
Sbjct: 57 AGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKI 114
Score = 61.7 bits (143), Expect = 6e-09
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = +1
Query: 91 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
+RP VSV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEK 56
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 58.4 bits (135), Expect = 6e-08
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = +3
Query: 252 GAGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
GAG++TSAESWGTGRAVA GGGTHR+ PTK WR R++
Sbjct: 57 GAGYETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKI 115
Score = 48.0 bits (109), Expect = 8e-05
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAV 54
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 57.2 bits (132), Expect = 1e-07
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
+G+QTSA SWGTGRA+A +GGGTHR+ PT+ WR HR+V
Sbjct: 57 SGYQTSARSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKV 114
Score = 50.0 bits (114), Expect = 2e-05
Identities = 28/53 (52%), Positives = 33/53 (62%)
Frame = +1
Query: 94 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
RP VSV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSK 55
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 56.4 bits (130), Expect = 2e-07
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
+G+QTSA SWGTGRA++ +GGGTHRS PT+ WR HR++
Sbjct: 57 SGYQTSARSWGTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKI 114
Score = 54.8 bits (126), Expect = 7e-07
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 88 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
V RP+VSV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISR 55
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 54.8 bits (126), Expect = 7e-07
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
++ ARP+VSV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVS 56
Score = 48.8 bits (111), Expect = 5e-05
Identities = 25/58 (43%), Positives = 28/58 (48%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQ SAESWGTGRAVA GT RS P K +R HR++
Sbjct: 59 AGHQHSAESWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKI 116
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 54.4 bits (125), Expect = 1e-06
Identities = 29/58 (50%), Positives = 29/58 (50%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AG Q SAESWGTGRAVA G GTHRS P K WR HRRV
Sbjct: 59 AGMQHSAESWGTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRV 116
Score = 52.8 bits (121), Expect = 3e-06
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +1
Query: 97 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
PLVSV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQ 58
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 51.6 bits (118), Expect = 7e-06
Identities = 27/58 (46%), Positives = 28/58 (48%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQ SAESWGTGRAVA G GT R+ P K WR HR V
Sbjct: 58 AGHQHSAESWGTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMV 115
Score = 38.7 bits (86), Expect = 0.051
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 100 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY 240
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPF 52
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 47.2 bits (107), Expect = 1e-04
Identities = 25/60 (41%), Positives = 30/60 (50%)
Frame = +3
Query: 249 QGAGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
+ AG Q SAESWGTGRA+A +GGGT R+ PTK R R+V
Sbjct: 53 KNAGMQHSAESWGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKV 112
Score = 35.1 bits (77), Expect = 0.62
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 103 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ Y TV+ LP VF PIR DLV + +RQPY VSK
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSK 53
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 46.8 bits (106), Expect = 2e-04
Identities = 24/58 (41%), Positives = 27/58 (46%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AG TSA SWGTGRAV+ G GTHRS PT WR H ++
Sbjct: 53 AGMGTSAVSWGTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKI 110
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 91 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
+RP V++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVS 55
Score = 35.5 bits (78), Expect = 0.47
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRR 425
AG Q SA SWGTGRAVA G G+ R+ P K +R R+
Sbjct: 58 AGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRK 114
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 44.4 bits (100), Expect = 0.001
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +1
Query: 97 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
P V V+ V A P P VF P+RPD++N VH + K R PY VS+
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSR 52
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 40.7 bits (91), Expect = 0.013
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 249 QGAGHQTSAESWGTGRAVAEFRVXRGGG 332
+ AG+QTSAESWGTGRA RGGG
Sbjct: 46 ESAGYQTSAESWGTGRARGPMPRVRGGG 73
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 38.7 bits (86), Expect = 0.051
Identities = 17/51 (33%), Positives = 36/51 (70%)
Frame = +1
Query: 88 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY 240
++R V+V +++ + + + LP VF PIR ++V +V+V+++KN++QP+
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPH 49
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 35.9 bits (79), Expect = 0.36
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 139 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 225
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 34.7 bits (76), Expect = 0.82
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 240 LREQGAGHQTSAESWGTGRAVAEFRVXRGGGTHRS 344
++ +G+Q SA+SWG GR +A +G GT ++
Sbjct: 54 IKYNNSGNQVSAKSWGPGRGLARIPRIKGSGTRKA 88
>UniRef50_Q6C8A5 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 258
Score = 33.5 bits (73), Expect = 1.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 206 TFLCPRTRGSPTA*ARSWSPNQCRIMGYRTCCCRIPR 316
T LCP T SPT+ + W P + R R+CC +PR
Sbjct: 173 TTLCPST--SPTSISSDWRPTRSRNTLVRSCCGIVPR 207
>UniRef50_Q7S3K1 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 352
Score = 33.1 bits (72), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 175 PIRPDLVNDVHVSMSKNSRQPYCVSKELVTKPVPNHGVP 291
P +PDL + H ++++ P + E+ KP PNH P
Sbjct: 134 PAQPDLQTETHAIRARDAGPPTRQTDEMNLKPTPNHWAP 172
>UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 194
Score = 32.3 bits (70), Expect = 4.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 387 HTVHXXTCYRRHPDRTYGYHHHGT--RGIRQQH 295
HT H + RH DR +G HHHG G R H
Sbjct: 129 HTGHHTRHHTRHHDRHHGRHHHGRHHHGHRPHH 161
>UniRef50_Q8RLB1 Cluster: Integrase; n=5; root|Rep: Integrase -
Streptococcus thermophilus
Length = 359
Score = 32.3 bits (70), Expect = 4.4
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 315 RGIRQQHVRYPMIRHWFGDQLLAHAVGL---PRVLGHRNVNIIDQV 187
R I + VR +RH + L+AH + L +VLGH N+NI +V
Sbjct: 282 RKIVGREVRVHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEV 327
>UniRef50_Q16AF0 Cluster: Putative uncharacterized protein; n=1;
Roseobacter denitrificans OCh 114|Rep: Putative
uncharacterized protein - Roseobacter denitrificans
(strain ATCC 33942 / OCh 114) (Erythrobactersp. (strain
OCh 114)) (Roseobacter denitrificans)
Length = 305
Score = 32.3 bits (70), Expect = 4.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 129 DGAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGT 290
DG G ++ PV I + PG S F E + L + +G+Q S++S+ T
Sbjct: 240 DGVGEDESIPVVISYQYNPNPGLSLSAFVGAEFDGRLRLDDASGNQISSQSYDT 293
>UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 1; n=2; Roseiflexus|Rep: HAD-superfamily
hydrolase, subfamily IA, variant 1 - Roseiflexus sp.
RS-1
Length = 223
Score = 32.3 bits (70), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 163 RTGGA-WLHPAPSHSSLNTPTLKVGLPIDSFXXFSEAIPP 47
R GG WLH A SH P +++GLP+ E +PP
Sbjct: 163 RIGGLRWLHAAQSHFHDVVPAVQMGLPVAWINRKHEPLPP 202
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 32.3 bits (70), Expect = 4.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 97 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY 240
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPY 46
>UniRef50_UPI00015A6D74 Cluster: Na(+)/H(+) exchange regulatory
cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator
protein 1) (TKA-1) (SRY-interacting protein 1) (SIP- 1)
(Solute carrier family 9 isoform A3 regulatory factor 2)
(NHE3 kinase A regulatory protein E3KARP)
(Sodium-hydroge; n=2; Danio rerio|Rep: Na(+)/H(+)
exchange regulatory cofactor NHE-RF2 (NHERF-2) (Tyrosine
kinase activator protein 1) (TKA-1) (SRY-interacting
protein 1) (SIP- 1) (Solute carrier family 9 isoform A3
regulatory factor 2) (NHE3 kinase A regulatory protein
E3KARP) (Sodium-hydroge - Danio rerio
Length = 385
Score = 31.9 bits (69), Expect = 5.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 390 EHTVHXXTCYRRHPDRTYGYHHHGTRGIRQQHVR 289
E + CY DR YG+H HG R Q++R
Sbjct: 2 ERELRPRLCYLTKGDRGYGFHLHGERNRGAQYIR 35
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,869,223
Number of Sequences: 1657284
Number of extensions: 8144282
Number of successful extensions: 20114
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20079
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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