Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0724
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    71   1e-13
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    70   2e-13
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   2.9  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   5.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   8.7  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    24   8.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 30/58 (51%), Positives = 32/58 (55%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
           AGHQTSAESWGTGRA+A      GGGTHRS                PTK WR  H +V
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKV 115


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 30/58 (51%), Positives = 32/58 (55%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
           AGHQTSAESWGTGRA+A      GGGTHRS                PTK WR  H +V
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKV 115


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 81  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 191
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 156 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 251
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 143 APCTVSLFSEYTDTKGRATDRLIXL 69
           A C V ++SEYT   G ++  L+ L
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVAL 514


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 118 LNTPTLKVGLPIDSFXXFSEAIPPKYTL 35
           +N PT+  G P  S      +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 132 GAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELE 230
           G G S  PP  I+G   S   +   RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,009
Number of Sequences: 5004
Number of extensions: 28615
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)