Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0724
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 64 3e-11
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 64 6e-11
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.098
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.17
10_02_0199 + 6668902-6669293,6669825-6669882 31 0.52
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 0.91
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.1
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 28 2.8
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 28 3.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 4.9
03_01_0147 - 1170481-1171260,1171332-1171511 27 4.9
04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500 27 6.4
02_04_0408 + 22655454-22655520,22656055-22656356 27 6.4
01_07_0304 - 42628086-42628104,42628828-42630263 27 8.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 64.5 bits (150), Expect = 3e-11
Identities = 31/58 (53%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAV+ GGGTHR+ PTK WR HRRV
Sbjct: 62 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRV 119
Score = 48.4 bits (110), Expect = 2e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 63.7 bits (148), Expect = 6e-11
Identities = 31/58 (53%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAV+ GGGTHR+ PTK WR HRRV
Sbjct: 61 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRV 118
Score = 50.4 bits (115), Expect = 6e-07
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.098
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 57 ASLX*XNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 212
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 57 ASLX*XNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 212
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 0.52
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 243 REQGAGHQTSAESWGTGRAVAEFRVXRGGGTHR 341
RE G G A+SW TGRA AE R GG R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRR 58
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 0.91
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 57 ASLX*XNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 212
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 57 ASLX*XNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 212
ASL N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 199 DVHVSMSKNSRQPYCVSKELVTKPVPNHGV 288
DVH+ +++NSR Y ++K+LV HGV
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGV 826
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = +3
Query: 180 TSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVAEFRVXRGGGTHR 341
T P R AALLR +GAG AE G RAV R G R
Sbjct: 224 TDTPSSLVMRGDTARARAALLRVRGAGADVEAELKGIVRAVEVARQGEDGAFRR 277
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 166 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 74
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 78 ESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 212
++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 149 DNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500
Length = 517
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 216 VQELEAALLREQGAGHQTSAESWGTGRAVAEFRVXRGGGTHR 341
V++ AAL R +GA AE G RAV R G R
Sbjct: 235 VEQARAALRRVRGAKADVDAELEGVARAVEAARANEEGAYRR 276
>02_04_0408 + 22655454-22655520,22656055-22656356
Length = 122
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +2
Query: 272 CRIMGYRTC--CCRIPRVPWWWYP 337
C + C CC P P+WW+P
Sbjct: 99 CGYGAFNECLQCCARPWFPFWWWP 122
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 26.6 bits (56), Expect = 8.5
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 109 VYSEKSETVQGAAKPLPFVFKAPIRP-DLVNDVHVSMSKNSRQPYCVSKELVTKPVP 276
V E S+T + AA L + +A P DL DV V++ K + V KEL+ P P
Sbjct: 167 VLGETSDTAEEAATRLAEIKEAVAIPADLDGDV-VAVPKRAGGERRVWKELILSPTP 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,231
Number of Sequences: 37544
Number of extensions: 251273
Number of successful extensions: 648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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