Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0724
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                66   1e-11
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1)                 28   2.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   3.8  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   6.6  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     27   6.6  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 33/58 (56%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
           AGHQTSAESWGTGRAVA     RGGGTHRS                PTK WR  H +V
Sbjct: 55  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKV 112



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 363 YRRHPDRTYGYHHHGTRGIRQQHVRYPMIRHWFGDQ 256
           Y +HP  T+ YHH   + I + H ++P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQHPQVIHRYH-QHPQVTHRYHQQ 447



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 363 YRRHPDRTYGYHHHGTRGIRQQHVRYPMIRH 271
           Y +HP  T+ YH H  +   + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQH-PQVTHRYHQQHPQVTH 261


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 342 TYGYHHHGTRGIRQQHVRYPMI-RHWFGDQLLAHAVGLP-RVLGHRNVN 202
           +Y +HHHGT     Q V    I R W   +L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 243 REQGAGHQTSAESWGTGRAVAEFRVXRGGGTH 338
           RE+GA  Q  AE   TG A  E R  R  GTH
Sbjct: 305 RERGARTQGVAEIGHTGSAAREPRASRRSGTH 336


>SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1)
          Length = 275

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 175 PIRPDLVNDVHVSMSKNSRQPYCVSKELVTKPVPNHGVPDVLLPN--SAC 318
           P++ DL+  +HV M +++R+   + +     PVP    P ++L N  SAC
Sbjct: 120 PLQADLIK-LHVQMQRSTREFDALKQVFTASPVPIRN-PSIILLNEESAC 167


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 158  GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 417  AERARAXWGEHTVHXXTCYRRHPDRTYGYHHHGTRGIRQQHVRYPMIRHW-FGDQLLAHA 241
            A+R R  +  H+ H    Y  H    Y YH    R +R     Y ++RH  F  ++L H 
Sbjct: 981  AQRLRHYYN-HSFHTTLNYHHHH---YHYHPFHYRLLRHHSFHYRLLRHHPFHYRVLRHH 1036

Query: 240  VGLPRVLGH 214
                RVL H
Sbjct: 1037 PFHYRVLRH 1045


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 209  FLCPRT---RGSPTA*ARSWSPNQCRIMGYRTCCCRIPR 316
            F C RT      P   A+S S N C I G+ + CC+  R
Sbjct: 933  FNCNRTGHIARDPVCPAKSQSCNSCGIKGHFSACCKTTR 971


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 366 CYRRHPDRTYGYHHHGTRGIRQQHVRY 286
           CYRR   R + YHHH  R    + +RY
Sbjct: 225 CYRRR--RRHFYHHHPRRYHNHRRLRY 249


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 209  FLCPRT---RGSPTA*ARSWSPNQCRIMGYRTCCCRIPR 316
            F C RT     +P   A+S + N C I G+ + CC+  R
Sbjct: 1228 FNCNRTGHIARNPVCPAKSQNCNSCGIKGHFSACCKTTR 1266


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 378 HXXTCYRRHPDRTYGYHHHGTRGIRQQHVRYPMIRHWF 265
           H   CY  H    Y +HH+      + H  YP  RH++
Sbjct: 20  HHYCCYCHHRYCYYRHHHYCWY---RHHYHYPCYRHYY 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,252
Number of Sequences: 59808
Number of extensions: 255318
Number of successful extensions: 519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)