Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0724
(428 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4 prot... 76 4e-14
AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4 va... 75 1e-13
D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein. 74 2e-13
BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4 va... 74 2e-13
AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4 pr... 74 2e-13
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain... 29 8.8
AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain... 29 8.8
>L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4
protein.
Length = 426
Score = 76.2 bits (179), Expect = 4e-14
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++VARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MAVARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSE 56
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/58 (56%), Positives = 33/58 (56%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQT AESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTRAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4
variant protein.
Length = 441
Score = 74.5 bits (175), Expect = 1e-13
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +1
Query: 79 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
+++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 14 AMACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 70
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 72 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 129
>D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4
variant protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHANLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE 56
Score = 69.7 bits (163), Expect = 4e-12
Identities = 34/58 (58%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK WR HRRV
Sbjct: 58 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 115
>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
protein protein.
Length = 3567
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 163 VFKAPIRPDLV-NDVHVSMSK---NSRQPYCVSKELVTKPVPNHGVPDVLLPNS 312
V P+ D++ N +H+ + +S P CV K L+T P VPDV++PNS
Sbjct: 1200 VICCPLCQDVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVP-----VPDVMMPNS 1248
>AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain
protein 4 protein.
Length = 3599
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 163 VFKAPIRPDLV-NDVHVSMSK---NSRQPYCVSKELVTKPVPNHGVPDVLLPNS 312
V P+ D++ N +H+ + +S P CV K L+T P VPDV++PNS
Sbjct: 1245 VICCPLCQDVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVP-----VPDVMMPNS 1293
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,915,757
Number of Sequences: 237096
Number of extensions: 1230107
Number of successful extensions: 2243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2213
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -