Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0724
(428 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 72 3e-13
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 72 3e-13
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 72 3e-13
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 72 3e-13
X06881-1|CAA29998.1| 123|Drosophila melanogaster protein ( Dros... 62 4e-10
BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p pro... 30 1.5
AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-P... 30 1.5
AY069725-1|AAL39870.1| 321|Drosophila melanogaster LP03067p pro... 29 2.6
AE014296-2375|AAF49748.1| 321|Drosophila melanogaster CG7924-PA... 29 2.6
AF145684-1|AAD38659.1| 1658|Drosophila melanogaster BcDNA.LD2387... 27 8.1
AE014297-845|AAF54313.1| 1658|Drosophila melanogaster CG11970-PA... 27 8.1
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 76 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKV 118
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 76 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKV 118
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 76 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKV 118
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 72.1 bits (169), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +1
Query: 76 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
AGHQTSAESWGTGRAVA RGGGTHRS PTK +R HR+V
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKV 118
>X06881-1|CAA29998.1| 123|Drosophila melanogaster protein (
Drosophila gene forribosomal protein L1 fragment. ).
Length = 123
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/56 (55%), Positives = 32/56 (57%)
Frame = +3
Query: 261 HQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
HQTSAESWGTGRAVA RGGGTHRS PTK +R HRRV
Sbjct: 1 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRRV 56
>BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p
protein.
Length = 1953
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 81 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQG--AHTSGPG 194
++GSP ++VG G G S APP + AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-PC
protein.
Length = 2528
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 81 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQG--AHTSGPG 194
++GSP ++VG G G S APP + AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>AY069725-1|AAL39870.1| 321|Drosophila melanogaster LP03067p
protein.
Length = 321
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSE--TVQGAAKP--LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
LS +P++ E+ E TVQ KP + V + + P + +D V ++++ +
Sbjct: 38 LSNGKPVILTNQEREEIATVQ-EIKPGKVHVVQEVVVPPTVKSDNKVRVTRSVSDSGIPN 96
Query: 250 KELVTKPVPNHGVPDVLLPN 309
+ +PNHG+P+ +PN
Sbjct: 97 HGIPNPGIPNHGIPNRGIPN 116
>AE014296-2375|AAF49748.1| 321|Drosophila melanogaster CG7924-PA
protein.
Length = 321
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 82 LSVARPLVSVYSEKSE--TVQGAAKP--LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
LS +P++ E+ E TVQ KP + V + + P + +D V ++++ +
Sbjct: 38 LSNGKPVILTNQEREEIATVQ-EIKPGKVHVVQEVVVPPTVKSDNKVRVTRSVSDSGIPN 96
Query: 250 KELVTKPVPNHGVPDVLLPN 309
+ +PNHG+P+ +PN
Sbjct: 97 HGIPNPGIPNHGIPNRGIPN 116
>AF145684-1|AAD38659.1| 1658|Drosophila melanogaster BcDNA.LD23876
protein.
Length = 1658
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 184 PDLVNDVHVSMSKN----SRQPYCVSKELVTKPVPNHGVPDVLLP 306
P + VHV+ + N S P K + KPVPN+ + + ++P
Sbjct: 1022 PSGLQTVHVATTPNQAGGSASPTVAKKLTIKKPVPNNKIGNFIIP 1066
>AE014297-845|AAF54313.1| 1658|Drosophila melanogaster CG11970-PA
protein.
Length = 1658
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 184 PDLVNDVHVSMSKN----SRQPYCVSKELVTKPVPNHGVPDVLLP 306
P + VHV+ + N S P K + KPVPN+ + + ++P
Sbjct: 1022 PSGLQTVHVATTPNQAGGSASPTVAKKLTIKKPVPNNKIGNFIIP 1066
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,770,807
Number of Sequences: 53049
Number of extensions: 400837
Number of successful extensions: 1387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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