Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0724
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    54   3e-08
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   5.7  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/58 (50%), Positives = 30/58 (51%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVAEFRVXRGGGTHRSXXXXXXXXXXXXXYVRPTKPWRARHRRV 428
           AG Q SAESWGTGRAVA     RGGGTHRS                P K +R  HR V
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNV 114



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -3

Query: 402 AXWGEHTVHXXTCYRRHPDRTYGYHHHGTRGIRQQH 295
           A  G H  H            +G HHHG+ G+   H
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGH 657


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 214 MSKNSRQPYCVSKELVTKPVPNHGVPDVLLPNSA 315
           M ++ RQP  V    VT P PN   P  +LP SA
Sbjct: 844 MVQHMRQPPVVFPIDVTVPPPNFSAPPPMLPASA 877


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -3

Query: 345  RTYGYHHHGTRGIRQQHVRYPMIRHWFGDQLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 166
            R  GY+    +       RYP +R      L + A  LPR++  R+ + +   R + R  
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433

Query: 165  YERE 154
            Y  E
Sbjct: 1434 YSNE 1437


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 191 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 78
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 191 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 78
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,277
Number of Sequences: 27780
Number of extensions: 179086
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)