Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0724
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.83 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 333 YHHHGTRGIRQQHVRYP 283
           +HHH T+ ++  H R P
Sbjct: 353 HHHHQTQSLQHLHYRQP 369


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 232 QPYCVSKELVTKPVPNHGVPDV 297
           QP  V+++L +   P HG P V
Sbjct: 259 QPVTVNRQLNSDVQPGHGSPPV 280


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 213 YVQELEAALLREQGAGHQTSAESWGTGRAVAEFRVXRGGGTH 338
           Y +   AA+++ +     T      +G      R+ RGGGT+
Sbjct: 226 YYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRIHRGGGTN 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,370
Number of Sequences: 438
Number of extensions: 2154
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)