Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y262 Cluster: Eukaryotic translation initiation facto...    60   3e-08
UniRef50_Q5BXV1 Cluster: SJCHGC05529 protein; n=1; Schistosoma j...    38   0.12 
UniRef50_A7T6P9 Cluster: Predicted protein; n=1; Nematostella ve...    38   0.12 
UniRef50_Q5K8M2 Cluster: Eukaryotic translation initiation facto...    35   0.64 
UniRef50_Q95QW0 Cluster: Putative uncharacterized protein; n=3; ...    34   1.5  
UniRef50_Q4PF85 Cluster: Putative uncharacterized protein; n=1; ...    33   1.9  
UniRef50_A0KEE3 Cluster: Sodium bicarbonate cotransporter; n=7; ...    32   5.9  
UniRef50_Q0DJU1 Cluster: Os05g0227700 protein; n=12; Magnoliophy...    32   5.9  
UniRef50_A5BYP6 Cluster: Putative uncharacterized protein; n=1; ...    31   7.8  
UniRef50_A5B560 Cluster: Putative uncharacterized protein; n=1; ...    31   7.8  
UniRef50_A4S558 Cluster: Predicted protein; n=2; Ostreococcus|Re...    31   7.8  

>UniRef50_Q9Y262 Cluster: Eukaryotic translation initiation factor 3
           subunit 6-interacting protein; n=47; Eumetazoa|Rep:
           Eukaryotic translation initiation factor 3 subunit
           6-interacting protein - Homo sapiens (Human)
          Length = 564

 Score = 59.7 bits (138), Expect = 3e-08
 Identities = 29/46 (63%), Positives = 33/46 (71%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLEV 227
           R +T K S  EI+ L +  K WNV  +LNVLHSLVDKSNI RQLEV
Sbjct: 201 RCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEV 246


>UniRef50_Q5BXV1 Cluster: SJCHGC05529 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05529 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 230

 Score = 37.5 bits (83), Expect = 0.12
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 KLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQL 221
           KL P +   L      W++  +LNVLHS V KSNI  QL
Sbjct: 148 KLKPEDEAQLLKSPTVWSIHSVLNVLHSFVAKSNINEQL 186


>UniRef50_A7T6P9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 221

 Score = 37.5 bits (83), Expect = 0.12
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 147 KAWNVLCILNVLHSLVDKSNIKRQLEV 227
           K WN+  +LNVL+SLV+KS I  QLE+
Sbjct: 59  KIWNIHSVLNVLYSLVEKSRINYQLEM 85


>UniRef50_Q5K8M2 Cluster: Eukaryotic translation initiation factor 3
           subunit 6, putative; n=2; Filobasidiella neoformans|Rep:
           Eukaryotic translation initiation factor 3 subunit 6,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 631

 Score = 35.1 bits (77), Expect = 0.64
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           RS     +  E+E L      W+   +LNVL+SLV KS I  QL+
Sbjct: 198 RSSPKAKTEEELEMLAESPNIWSSYSVLNVLYSLVQKSQINEQLK 242


>UniRef50_Q95QW0 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 537

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 105 KLSPAEIEAL-NTENK--AWNVLCILNVLHSLVDKSNIKRQLE 224
           K +  E+E L N E    AWN+  +LN+L+SL+ KS I  QL+
Sbjct: 171 KRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVEQLK 213


>UniRef50_Q4PF85 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 668

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQL 221
           R++ +  S  EI AL  +   W+   +LNVL+SL+ KS I  QL
Sbjct: 224 RNKVSNKSEDEI-ALLQDGGVWSSYSVLNVLYSLIQKSRITEQL 266


>UniRef50_A0KEE3 Cluster: Sodium bicarbonate cotransporter; n=7;
           Bacteria|Rep: Sodium bicarbonate cotransporter -
           Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
           / NCIB 9240)
          Length = 357

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 190 RECRTLRMHSTFQALFSVLRASISAGLNFVVRDLGKLSI 74
           R+C+ LR H  F   F++L    SAGL  V+  L  LS+
Sbjct: 256 RQCQDLRRHGLFLLGFALLMPLASAGLGLVIGQLVGLSL 294


>UniRef50_Q0DJU1 Cluster: Os05g0227700 protein; n=12;
           Magnoliophyta|Rep: Os05g0227700 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 529

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R++    +  EI  L   ++AW+V  +LN L +LV+KS I   LE
Sbjct: 167 RAKLKNKTHEEIALLKQYDQAWSVYGVLNYLKALVEKSMIGEILE 211


>UniRef50_A5BYP6 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 862

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 282 HLTSRI*SDVNCLPFQNKIHKKNETNSYVKQILCV*NTLLSSGICIWW 425
           H   +    VNC  F+N + KK + +  +   +C  + L++  +  WW
Sbjct: 115 HCNKKCHKRVNCFKFRNWLEKKKKEHGMLSAYVCFESNLVNVPLDSWW 162


>UniRef50_A5B560 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 795

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 281 YLT*PFNEPLVGKKN*KTYLKLTFNIRLVYERVQNIEDAQYVPS 150
           YL+ P ++  V  K    YL+ T +  LVY RV N+E   Y+ S
Sbjct: 655 YLSNPGHDHWVAAKKVMRYLQRTKDFMLVYRRVDNLEVVGYLDS 698


>UniRef50_A4S558 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 502

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  TTKLSPAEIEALNT-ENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           ++K +  E++A+   + + W+   +LN L +LVDKS+I R LE
Sbjct: 137 SSKRTSEELQAIKALDAQVWDRTSMLNFLKALVDKSDIVRVLE 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,266,476
Number of Sequences: 1657284
Number of extensions: 6733132
Number of successful extensions: 15476
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15474
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)