Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   2.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   2.8  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   3.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.6  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 399 VRYFTHTGFVLRSYSFRFFYEFCFGMV 319
           ++YF   GFV  + +F  F EFC G+V
Sbjct: 762 IKYF---GFVRNATTFGVFVEFCDGLV 785


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 VYHSKTKFIKKTKRIAT*NKSCVCKIPYFLQVYAS 420
           V+ +    +    ++AT N+S +C +P+FL+ +++
Sbjct: 396 VFPTPLYLVSDILQLATHNRSFICSLPHFLRRWSN 430


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 173 EDAQYVPSLILSIKSFNFSWTQL 105
           E   ++PSL +S  S+N  W+ L
Sbjct: 193 ESKVHIPSLFVSTSSYNLLWSDL 215


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +3

Query: 60  IL*REIDNFPRSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLEVCFLI 239
           +L R  DN PR +  + +     +  T    +++L  + + +S++    I        LI
Sbjct: 543 VLGRIFDNTPRKKWNRWNQLSAPSWGTVYPVYSLLVTIMICYSIIAPIIIGFAAVAFVLI 602

Query: 240 FFSY 251
           +F+Y
Sbjct: 603 YFAY 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,432
Number of Sequences: 5004
Number of extensions: 32793
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)