Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    37   0.006
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    32   0.23 
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   4.9  
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    27   6.5  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R++    S  E+  L   +KAWNV  +LN L +LV+KS I + LE
Sbjct: 159 RAKLKNKSDDELHQLKQFDKAWNVYGVLNYLQALVEKSMIAQILE 203


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R++    +  EI  L   ++AW+V  +LN L +LV+KS I   LE
Sbjct: 139 RAKLKNKTHEEIALLKQYDQAWSVYGVLNYLKALVEKSMIGEILE 183


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 176  IEDAQYVPSLILSIKS--FNFSWTQLCGTRPGKI 81
            +E A+ V   IL IK   FN  WT++  T P  +
Sbjct: 980  VEMAENVAQFILQIKELEFNIRWTEILSTLPASL 1013


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 129 LQFQLDSTLWYETWENYQFLFIVFTSSEINYLINIFSC 16
           L +++ S L+Y +     F+  +FT  E  Y+++ F C
Sbjct: 129 LAYEVFSCLYYASQSKIAFVSAIFTYGESIYILSDFRC 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,002
Number of Sequences: 37544
Number of extensions: 164610
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)