Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089607-1|AAL90345.1|  539|Drosophila melanogaster RE21692p pro...    54   8e-08
AE014296-2102|AAF49952.1|  539|Drosophila melanogaster CG5642-PA...    54   8e-08

>AY089607-1|AAL90345.1|  539|Drosophila melanogaster RE21692p
           protein.
          Length = 539

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEAL--NTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R+R T+ S  EI+ L  N  N+ W++LCILNVLHSLVD SNIK+QLE
Sbjct: 171 RARLTEKSQDEIQQLCVNHSNE-WSILCILNVLHSLVDISNIKKQLE 216


>AE014296-2102|AAF49952.1|  539|Drosophila melanogaster CG5642-PA
           protein.
          Length = 539

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEAL--NTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R+R T+ S  EI+ L  N  N+ W++LCILNVLHSLVD SNIK+QLE
Sbjct: 171 RARLTEKSQDEIQQLCVNHSNE-WSILCILNVLHSLVDISNIKKQLE 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,699
Number of Sequences: 53049
Number of extensions: 301459
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)