Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical p...    34   0.050
U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical p...    34   0.050
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    27   4.4  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical
           protein C17G10.9a protein.
          Length = 537

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 105 KLSPAEIEAL-NTENK--AWNVLCILNVLHSLVDKSNIKRQLE 224
           K +  E+E L N E    AWN+  +LN+L+SL+ KS I  QL+
Sbjct: 171 KRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVEQLK 213


>U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical
           protein C17G10.9b protein.
          Length = 535

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 105 KLSPAEIEAL-NTENK--AWNVLCILNVLHSLVDKSNIKRQLE 224
           K +  E+E L N E    AWN+  +LN+L+SL+ KS I  QL+
Sbjct: 169 KRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVEQLK 211


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 390 FTHTGFVLRSYSFRFFYEFCFGMVNS 313
           FTH  F+ RSY F F Y   FG++++
Sbjct: 15  FTHAQFLFRSYLFPFVY--LFGIISN 38


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 141 ENKAWNVLCILNVLHSLVDKSN--IKRQLEVCFLIFF 245
           E+  W V+ ++N   ++VD SN    R    C+++FF
Sbjct: 641 EDLHWLVIAVINPSGAIVDMSNEEASRAAPKCYIVFF 677


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 279 IHLTSRI*SDVNCLPFQNKIHKKNETNSYVKQIL 380
           +  T R     NCLP  +K  +KN+   Y++  L
Sbjct: 168 VERTYRFAEHANCLPKNSKFMRKNQKEVYMRDCL 201


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 149 LILSIKSFNFSWTQLCGTRPGKIINFSL*YLQVLKLII 36
           ++LS+ + NF +  L  T P K+  FSL ++ +   I+
Sbjct: 59  MMLSLLTINFYYRYLSVTCPSKLSRFSLKFVPIWTFIV 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,447,772
Number of Sequences: 27780
Number of extensions: 173693
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)