Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    24   0.84 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.5  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 143 LSIKSFNFSWTQLCGTRPGKIIN 75
           L + + NFSW   C TR  +II+
Sbjct: 58  LRLDTGNFSWGSECTTRKTRIID 80


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -2

Query: 123 FQLDSTLWYETWENYQFLFIVFTSSEINYLINIF 22
           F   S  W    ENY+ + +     + N   N+F
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMF 463


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -2

Query: 123 FQLDSTLWYETWENYQFLFIVFTSSEINYLINIF 22
           F   S  W    ENY+ + +     + N   N+F
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMF 463


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 208 ILDLSTRECRTLRMHSTFQA---LFSVLRASISAGLNFVVRDLGK 83
           +L LST+    +++HS FQ    L+ V+       L + ++  GK
Sbjct: 37  VLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGK 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,584
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)