Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0722
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25757.1 68418.m03055 expressed protein                             37   0.007
At5g25754.1 68418.m03054 expressed protein                             37   0.007
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    28   3.1  
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    28   3.1  
At1g48110.1 68414.m05369 expressed protein contains Pfam profile...    27   4.1  
At2g29370.1 68415.m03568 tropinone reductase, putative / tropine...    27   5.5  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    26   9.6  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    26   9.6  

>At5g25757.1 68418.m03055 expressed protein
          Length = 514

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R++    +  EI  L   +KAWNV  +LN L +LV+KS I + LE
Sbjct: 152 RAKLKNKTEEEIALLRQHDKAWNVYGVLNFLQALVEKSCIIQILE 196


>At5g25754.1 68418.m03054 expressed protein
          Length = 514

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 90  RSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 224
           R++    +  EI  L   +KAWNV  +LN L +LV+KS I + LE
Sbjct: 152 RAKLKNKTEEEIALLRQHDKAWNVYGVLNFLQALVEKSCIIQILE 196


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 169 SSMFCTLS*TSLI-LNVSLRYVF*FFFPTRG 258
           SS FC++S + LI L + L + F  FF TRG
Sbjct: 657 SSSFCSISSSFLIILEIPLHHGFKLFFETRG 687


>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
           similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 {Homo sapiens}; contains
           Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 147 KAWNVLCILNVLHSLVDKSNIKRQLE 224
           K  ++ C++NVL SLVD   I+R+ E
Sbjct: 536 KGSSLQCLVNVLKSLVDWEKIRREAE 561


>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 639

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 292 VEFRATSTVYHSKTKF---IKKTKRIAT*NKSCVCKIPYFLQVYASG 423
           +++   S+  H   K     +  +RIAT  KSC C I  F  V ASG
Sbjct: 338 IKYNVWSSTLHGNKKLQSAYEDAQRIAT-EKSCECPIFLFFSVNASG 383


>At2g29370.1 68415.m03568 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to SP|P50162 Tropinone
           reductase-I (EC 1.1.1.206) (TR-I) (Tropine
           dehydrogenase) {Datura stramonium}
          Length = 268

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 338 NFVLEW*TVDVALNSTC*VYLT*PFNEPLVGKKN*KTYLKLTFNIRLVYE 189
           N   EW + ++  NS C  ++T P  +  +G K+ K  ++    +R V E
Sbjct: 181 NLACEWASDNIRANSVCPWFITTPSTKDFLGDKDVKEKVESVTPLRRVGE 230


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 IFFSY*RFVEGSC*IHLTSRI*SDVNCLPFQNKIHKKNETNS 362
           IF  Y  F+EGS  I +   + SD      +NK HKK+ + +
Sbjct: 292 IFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRT 333


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 209 NIRLVYERVQNIEDAQYVPSLILSIKSFNFSWTQLCGTRPGKIINFS 69
           ++ +++    NI+ A  +P+L LSIK+F+  +    G  P  I N S
Sbjct: 365 SMEILFMHSNNIQGA--LPNLPLSIKAFSAGYNNFSGEIPLSICNRS 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,597,376
Number of Sequences: 28952
Number of extensions: 151129
Number of successful extensions: 293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)