Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0721
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   6.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   8.4  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +3

Query: 255 YSMADGAKEKLRGICKNIHIECYKEETQFAPENASGIXLTXQXVLRLHSG 404
           + + +  +++LR   K +   CY +      EN S + +    +  LH G
Sbjct: 357 FYVEEARRKRLRPFDKALKSFCYSDALDMVLENGSPVLIITMLIELLHVG 406


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 249  FNRQTASYIAPAVHSGDFAPPRHVGGLHVP*GRHLHRHVTTTLREIPSSMY 97
            F  Q A+      HSG+ +  +H    +      L  HV TT  E PSS +
Sbjct: 863  FKEQDANKKREDFHSGEVSAIQHSSAQNT-----LDDHVNTTTHESPSSAF 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,676
Number of Sequences: 5004
Number of extensions: 31021
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)