Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0721
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930...    29   1.1  
07_01_0860 - 7142913-7144895                                           29   2.0  
07_01_0813 - 6405897-6405961,6406328-6406901                           28   2.7  
12_01_0732 + 6524622-6524634,6524907-6525511                           27   4.6  
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575...    27   6.1  
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302...    27   6.1  
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030...    27   8.1  
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500...    27   8.1  

>04_04_0032 +
           22291469-22291818,22292438-22292681,22292873-22293052,
           22293843-22294070
          Length = 333

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 97  IHRRGYFPKGGGHVTVEVSPLRH---VQAADVTRGGEVAAV-YGWSYVAGCLPIKMATQW 264
           IH   YFP GG H T  V+P+     ++     +G  VA +   W Y  G   +  +T+ 
Sbjct: 219 IHVTAYFPLGGRHSTSTVNPVLDSDVLKEIAAAKGKSVAQISLRWIYEQGASMVTTSTK- 277

Query: 265 RMVLRRN 285
           R  L+ N
Sbjct: 278 RERLKEN 284


>07_01_0860 - 7142913-7144895
          Length = 660

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 118 PKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLPIKMATQWRMVLRRNSAGS 297
           P+GG HV+ EV   R     +    G V+   G  Y  G + +++AT  R V+   S G+
Sbjct: 481 PEGGTHVSTEVRGTRGYVDPESFSAGHVSEA-GDVYSFGVVLLELATGMRAVVPTPSGGA 539


>07_01_0813 - 6405897-6405961,6406328-6406901
          Length = 212

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 121 KGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWS 222
           +GGG  T    PL H+  A   RGG +A    W+
Sbjct: 116 EGGGGATAAPLPLLHLNPASSIRGGALARPPPWA 149


>12_01_0732 + 6524622-6524634,6524907-6525511
          Length = 205

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = -3

Query: 392 PEDXLXXQXDTASVFGSELRFLFVTLYVNVLADPAEFLLSTIRH*VAILIGRQPAT*LQP 213
           P   L       SV G  +      + +++   P   L  ++    A+ I   P   LQ 
Sbjct: 25  PPSTLSLPPAVPSVAGDGVLIDVPMVALDLDGQPTAQLPLSVAENTALRIYTPPRQLLQD 84

Query: 212 YTAATSPPRVTSAACTCRRGDTS 144
             ++T+P  + S AC C R  TS
Sbjct: 85  SASSTAPAALASYACRCHRRVTS 107


>10_02_0139 +
           5753426-5754841,5755566-5755655,5756011-5756379,
           5756796-5756982,5757567-5757631
          Length = 708

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 76  GVDFNLTIHRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAA 207
           G   +L   +R   P  GGH  + V+P R +     T G ++AA
Sbjct: 202 GFGRSLEKEQRVVQPSAGGHEALGVAPPRELHTMQTTGGRDMAA 245


>08_01_0343 -
           3025577-3025810,3026428-3026505,3026630-3026748,
           3027566-3027645,3028034-3028107,3028536-3028620,
           3028704-3028789,3028968-3029038,3029126-3029207,
           3029490-3029531,3029552-3029584,3029699-3029794,
           3030163-3030414,3030970-3031149,3032079-3032119,
           3032341-3032470,3032504-3032606,3032686-3032773,
           3033151-3033304,3033688-3033739,3033815-3033894,
           3034478-3034789,3034886-3034955,3035033-3035100,
           3035405-3035678,3036408-3036580,3037036-3037128,
           3037228-3037443
          Length = 1121

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 SMADGAKEKLRGICKNIHIECYK 326
           S  DGA + LRG+C  IH   YK
Sbjct: 88  SPCDGADDVLRGVCHLIHDIMYK 110


>04_03_0051 +
           10199702-10199839,10199869-10200642,10202481-10203077,
           10237046-10237159
          Length = 540

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 139 TVEV-SPLRHVQAADVTRGGEVAAVYGWSYVA 231
           TVEV S  R +++ADV RGGEV  +  W Y+A
Sbjct: 129 TVEVFSAHRLLRSADV-RGGEVPHMARWLYLA 159


>03_05_0248 +
           22348504-22348568,22349064-22349371,22349476-22350039,
           22350082-22350128,22351244-22351715,22352349-22352611
          Length = 572

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 10  NAEMAPQIDYMTEVFKHAVKHFGVDFNLTIHRRGYFPKGGGHVTVEVSPLRHV 168
           N  +    DY+    KHA+    +D  L    RG+ P+     T E   +R V
Sbjct: 494 NPHLVTDKDYLHTAMKHAITCGVIDQWLLARERGFLPRERADPTSEQFGVRFV 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,453
Number of Sequences: 37544
Number of extensions: 279472
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)