Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0721
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48689| Best HMM Match : RTC (HMM E-Value=0.047)                     64   6e-11
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   2e-06
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)                  48   2e-06
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  31   0.39 
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   4.8  
SB_20895| Best HMM Match : PBS_linker_poly (HMM E-Value=2.7)           27   6.3  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                27   6.3  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_48689| Best HMM Match : RTC (HMM E-Value=0.047)
          Length = 174

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 22/104 (21%)
 Frame = +1

Query: 10  NAEMAPQIDYMTEVFKHA----------------------VKHFGVDFNLTIHRRGYFPK 123
           +AEMAP IDYMT+VFK A                      ++  GV F+ TI RRGYFPK
Sbjct: 30  DAEMAPPIDYMTQVFKPAAEKLGVKFHCTIIRRYRSMNVMLQKLGVKFDCTIIRRGYFPK 89

Query: 124 GGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLPIKMA 255
           GGG V V V  ++ ++   +   G +    G ++VAG +P K+A
Sbjct: 90  GGGEVLVNVDVVKSLKPVQLVEFGSLLRFTGKAWVAGVIPYKVA 133


>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 100 HRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLPIKMA 255
           H   YFP+  G V +   P+ +++A D+T  G +  + GW+ VAG  PI++A
Sbjct: 241 HSGSYFPQSSGKVVIRSFPVTNLKAVDLTTPGRLVKITGWTSVAGAKPIRIA 292


>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
          Length = 565

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 100 HRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLPIKMA 255
           H   YFP+  G V +   P+ +++A D+T  G +  + GW+ VAG  PI++A
Sbjct: 388 HSGSYFPQSSGKVVIRSFPVTNLKAVDLTTPGRLVKITGWTSVAGAKPIRIA 439


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 215  PYTAATSPPRVTSAACTCRRGDTSTV 138
            P+T +T+PP  T   C C+ G+T  +
Sbjct: 3174 PFTGSTTPPPTTRPPCECKDGETGVL 3199


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 67  KHFGVDFNLTIHRRGYFPKGGGHVTVEVSP 156
           + F V F LT H+R + PK     T+E +P
Sbjct: 839 RSFAVAFWLTRHKREHMPKSADGETIEETP 868


>SB_20895| Best HMM Match : PBS_linker_poly (HMM E-Value=2.7)
          Length = 196

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 155 GDTSTVT*PPPFGKYPLLCMVR 90
           GD+S    PPP  +YP LC+VR
Sbjct: 122 GDSSV---PPPLYRYPRLCIVR 140


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 218 QPYTAATSPPRVTSAACTCRRGDTSTVT*PPP 123
           QP++AAT+ P+  SAA T  +  ++  T P P
Sbjct: 71  QPHSAATTQPQPHSAATTKPQPHSAATTKPQP 102


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 133 HVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLPIKMATQWRMVLRRN-SAGSARTF 309
           H++  V  L     AD+ +   V  V   +   G  P  M   WR ++RRN  A S +  
Sbjct: 36  HISARVLALDDYNVADLIKEDLVVFVCATTG-QGDEPDNMKKFWRFIMRRNLPAHSLQQL 94

Query: 310 T*SVTKRKRSSLPK 351
           + SV     SS PK
Sbjct: 95  SFSVLGLGDSSYPK 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,528
Number of Sequences: 59808
Number of extensions: 272741
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)