Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0721
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z92972-6|CAB07485.1|  153|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    26   9.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    26   9.5  

>U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical
           protein F36H5.11 protein.
          Length = 523

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 43  TEVFKHAVKHFGVDFNLTIHRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWS 222
           T+V+  AV   G+ F   +  RG  P    +    +  ++H ++ D+TRG  V A   W+
Sbjct: 202 TDVYDEAVIFTGIQFQAAV-ARGVHP---AYERENLPRIKHGRSFDITRGDGVVATISWA 257


>Z92972-6|CAB07485.1|  153|Caenorhabditis elegans Hypothetical
           protein T19C9.6 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 75  KMFDCMLKDLGHVVNLRGHLCI 10
           K   C LKD G    + GHLCI
Sbjct: 131 KWVQCKLKDRGDSYGISGHLCI 152


>U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical
           protein ZK1127.5 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 88  NLTIHRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWSYVAGCLP 243
           ++ I  RG  P+GGG V      ++ ++     + G+V  + G +YV    P
Sbjct: 149 DIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGKVCKIRGQAYVTKVTP 200


>Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical
           protein F42G4.3b protein.
          Length = 176

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 267 DGAKEKLRGIC--KNIHIECYKEE 332
           DG KE +R +   K+ H++CYK E
Sbjct: 115 DGEKESVRVVAMDKSFHVDCYKCE 138


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 267 DGAKEKLRGIC--KNIHIECYKEE 332
           DG KE +R +   K+ H++CYK E
Sbjct: 542 DGEKESVRVVAMDKSFHVDCYKCE 565


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 16    EMAPQIDYMTEVFKHAVKHFGVDFNLTIHRRGYFPKGGGHVTVEVSPLRHV 168
             E+AP +   TE+      H G +F+  +   G FP    H+T   +PL+ +
Sbjct: 14727 EVAPNLIIPTEIRDGVTVHAGNEFDFAVEFSG-FPIPTIHLTNNGTPLKAI 14776


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 16    EMAPQIDYMTEVFKHAVKHFGVDFNLTIHRRGYFPKGGGHVTVEVSPLRHV 168
             E+AP +   TE+      H G +F+  +   G FP    H+T   +PL+ +
Sbjct: 14727 EVAPNLIIPTEIRDGVTVHAGNEFDFAVEFSG-FPIPTIHLTNNGTPLKAI 14776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,138
Number of Sequences: 27780
Number of extensions: 200264
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)