Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0721
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   1.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.4  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   5.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 218 QPYTAATSPPRVTSAACTCR 159
           + Y A + PPR+TS   T R
Sbjct: 83  EEYAANSQPPRITSVPNTSR 102


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 151 SPLRHVQAADVTRGGEVAAVYGWSYVA 231
           SPL  V + + T  GEVA++  + +VA
Sbjct: 488 SPLGSVSSTESTCSGEVASLTEYHHVA 514


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 191 PRVTSAACTCRRGDTST 141
           PRV S   TC++  TST
Sbjct: 106 PRVESVVETCKKEVTST 122


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 191 PRVTSAACTCRRGDTST 141
           PRV S   TC++  TST
Sbjct: 80  PRVESVVETCKKEVTST 96


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 207 CVRLELCSWLSAY*NGYSMAD 269
           CV L + SW+S + N  + AD
Sbjct: 224 CVLLVVLSWVSFWLNREATAD 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,762
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)