Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0719
         (426 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 248 CQVN*SDCFHKPC 210
           C +N  DC   PC
Sbjct: 103 CNINTDDCSPNPC 115


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = -3

Query: 85  TISWISKLLLK 53
           T++W+SKL+++
Sbjct: 598 TLNWVSKLIIR 608


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 248 CQVN*SDCFHKPCPLILRXHNIV 180
           C++N  DC   PC      H++V
Sbjct: 219 CELNVDDCKPNPCQNGGTCHDLV 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,985
Number of Sequences: 336
Number of extensions: 1532
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)