Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0719
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   2.1  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   3.7  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   3.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   4.9  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   6.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   8.6  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 130 VLSKGISSIVSKIARTISWISKLLLKFYFLNCVISKILIH 11
           +LSKG+SS  S ++ T       LLK  F+  VIS  L+H
Sbjct: 191 ILSKGVSSTRSPVSNT------KLLKAEFIKQVISCFLLH 224


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 227 NHSN*--LDNTSGDDTS-SNVRRLCRKAAYPIPIDIMNPSDNLHT 352
           NH+N    +N S   TS SN  +     +YP+ + + N ++N HT
Sbjct: 340 NHANGNQAENASESSTSQSNDSQGPANTSYPVSVPLPNDAENNHT 384


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 NTSGDDTSSNVRRLCRKAAYPIP 316
           N SG DTSSNV  L   A+  IP
Sbjct: 554 NASGGDTSSNVSLLNGSASEEIP 576


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 102 TIDDMPLDNTFINKSNVDSQVXSILYNNVVXPKDERAWLMK 224
           T++  P+D T +    VDS   S     +V  K+ R W +K
Sbjct: 180 TVNWDPVDCTVLANEQVDSHGRSWRSGAIVEKKNLRQWFLK 220


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 109 SIVSKIARTISWISKLLLKFYFLNCVISKIL 17
           SI   I ++ S  SK+    Y+L+C++ K++
Sbjct: 320 SIFHHIVQSTSTPSKVAAAKYYLDCILEKLI 350


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 278  HLMMCHHQKCCQVN*SDCFHKPCPLIL 198
            H+++ HH K C V    C    C ++L
Sbjct: 1020 HVLLLHHPKSCSV--VKCLWASCDMVL 1044


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,357
Number of Sequences: 5004
Number of extensions: 26239
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)