Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0719
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)                    27   6.5  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   8.6  

>SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)
          Length = 796

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 SNHSN*LDNTSGDDTSSNVRRLCRKAAYPIPIDI 325
           SN +  LD TS D  +    RLCR   Y  P+D+
Sbjct: 619 SNSTVALDKTSLDGLNEYFGRLCRDDNYTKPVDL 652


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -3

Query: 121 KGISSIVSKIARTISWISKLLLKFYFLNCVISKI 20
           KG+ ++V+ + R++  ++ +L+ F F  CV++ I
Sbjct: 199 KGLRAMVNSLLRSLKLLTDVLVLFLFSLCVLALI 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,224
Number of Sequences: 59808
Number of extensions: 188277
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)