Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0719
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical p... 29 1.4
U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical p... 28 2.4
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 27 4.3
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 27 5.6
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 27 7.4
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 27 7.4
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 27 7.4
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 26 9.8
>U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical
protein F09E5.3 protein.
Length = 303
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 242 LDNTSGDDTSSNVRRLCRKAAYPIPID 322
L +GDDT+S V L ++A P+P D
Sbjct: 67 LTTLNGDDTASKVVALAKRAINPVPTD 93
>U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical
protein K06C4.9 protein.
Length = 492
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 154 STLLLFINVLSKGISSIVSKIARTISWISKLLLKFYFLNCV 32
+T L FIN++SK + + R I IS LLL Y + V
Sbjct: 391 NTTLKFINMVSKTYAQFRFPVIRVIHHISNLLLVIYSASTV 431
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVXSILYNNVVXPKDERAWLMKAITLID 242
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1267 VEEVFGAVIDPTTSYPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1322
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 142 LFINVLSKGISSIVSKIARTISWISKLLLKFY 47
L I + GI SIV + I WI K L FY
Sbjct: 292 LLITAVLYGIMSIVYETINFIYWIDKYLCHFY 323
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVXSILYNNVVXPKDERAWLMKAITLID 242
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1141 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1196
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVXSILYNNVVXPKDERAWLMKAITLID 242
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1247 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1302
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVXSILYNNVVXPKDERAWLMKAITLID 242
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1247 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1302
>AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical
protein ZK616.8 protein.
Length = 360
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 206 EGMAYESNHSN*LDNTSGDDTSSNVRRLCRKAAYPI 313
E A + NHSN L ++ NV+R +KA +PI
Sbjct: 274 ERRATQYNHSNSLSGSNEAVPPGNVKRSPQKATHPI 309
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVXSILYNNVVXPKDERAWLMKAITLID 242
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1146 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1201
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
ZK430.1 protein.
Length = 1650
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 269 SSNVRRLCRKAAYPIPIDIMNPSDNLHTXAAVSTLQRCLMYV 394
S R+C+ +AY + + N + T+QRC+ V
Sbjct: 1086 SEEKMRMCQNSAYTLKLIAKNLPSQSESLVLADTMQRCVSIV 1127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,040
Number of Sequences: 27780
Number of extensions: 142952
Number of successful extensions: 303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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