Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0719
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    30   0.57 
At1g51190.1 68414.m05758 ovule development protein, putative sim...    26   9.3  

>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 130 VLSKGISSIVSKIARTISWISKLLLKFYFLNCVISKILIHP 8
           +LSK  SS  S I  ++ WI K+++   F+  V+  ++++P
Sbjct: 8   LLSKDSSSSSSVITSSLKWILKVVMSMIFVTWVVFLMMMYP 48


>At1g51190.1 68414.m05758 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 568

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 269 SSNVRRLCRKAAYPIPIDIMNPSDNLHTXAAVSTLQ 376
           SS+V    R    P P+ I  P ++LH    + TLQ
Sbjct: 406 SSSVASSSRLQLQPYPLSIQQPFEHLHHHQPLLTLQ 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,019
Number of Sequences: 28952
Number of extensions: 125398
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)