Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0715
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   0.93 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   6.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   8.7  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    24   8.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 192 SAEYKLEGDVVKVKNVHIIDGSRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 344
           SA  K+  D +  KN H    SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 518 SALAKIGHDALNRKN-HASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 282 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKS 431
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKS
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKS 196


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 117 LTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 248
           L  + G+W ++ +F  E     KCS    KL G  V  K + ++
Sbjct: 869 LLMHHGLWQKLEEFLGELRTQTKCS---IKLSGREVVAKMLVVL 909


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 326 FKFGEISRDGSVQ-VLATDYNNYAIAYNCKYDDKK 427
           FKFGEI  +GS   VL    N+    Y  K  DK+
Sbjct: 99  FKFGEILGEGSYSTVLTATENSTKREYAIKVLDKR 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,330
Number of Sequences: 5004
Number of extensions: 27201
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)