Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0715
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    44   5e-05
02_04_0592 - 24171698-24172285                                         33   0.099
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.30 
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    27   4.9  
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710...    27   6.5  
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    27   8.6  
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503...    27   8.6  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 93  LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGSR 260
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N    DG R
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRR 58


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 33.1 bits (72), Expect = 0.099
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 90  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGS 257
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V N      G 
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 258 RSI*KG 275
           R   KG
Sbjct: 73  RDYIKG 78


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 102 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 218
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 233 ERAYHRRLKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 400
           +R Y R L K +     + D A    ++   FK G   R+G  QV +  ++N+ IA
Sbjct: 196 QRGYGRHLSKDVVDKEIVPDMARYLKEMKAMFKLGIGCRNG--QVTSLSFHNFQIA 249


>10_07_0039 -
           12269928-12270103,12270871-12271015,12271066-12271094,
           12271394-12271478
          Length = 144

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 153 KFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGSRSI*KGRPSSP 290
           K+ N+  K  KC   E  +EGD +    + I+DG R    G+ + P
Sbjct: 51  KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPGQSTVP 94


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 269 EGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 397
           EG   +TD      K+ +    G+ S DG V      +NN+ +
Sbjct: 179 EGDNMITDGPLSKVKVEIVVLRGDFSNDGRVSWTEEQFNNHIV 221


>02_05_1048 +
           33748260-33748433,33748886-33748978,33750174-33750371,
           33750502-33750675,33750769-33750875,33751233-33751564,
           33751654-33752147
          Length = 523

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 135 IWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGS 257
           +W ++  FPN+ +KN         L GD +K  ++HI+DGS
Sbjct: 59  LWQQMDLFPNKQKKNILIELLALIL-GDRLK-WDMHILDGS 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,221
Number of Sequences: 37544
Number of extensions: 178948
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)