Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0715
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  36   0.019
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)                    27   5.0  
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)                  27   6.6  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  27   8.7  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 78  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD 218
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
          Length = 508

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 144 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGSRSI 266
           E+ ++  ESE+NGK SS    +  + V +K + + DG++ +
Sbjct: 38  EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAKMV 77


>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
          Length = 176

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 257 KKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 361
           K++IEG ++ +   +K +KL   F+  ++  DG +
Sbjct: 94  KEFIEGVSQFSVKGDKESKLKFAFRIYDMDNDGYI 128


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 96  KPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEG 215
           K V N +L    G WYEI+ +      NG  ++    + G
Sbjct: 78  KAVENLHLDISSGNWYEITIYTGVWRNNGTTANVAATISG 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,414
Number of Sequences: 59808
Number of extensions: 209307
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)