Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0715
(432 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 52 1e-06
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 52 1e-06
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 52 1e-06
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 52 1e-06
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 52 1e-06
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 52 1e-06
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 52 1e-06
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 32 0.96
BC105119-1|AAI05120.1| 142|Homo sapiens cystatin 8 (cystatin-re... 29 5.1
BC105113-1|AAI05114.1| 142|Homo sapiens cystatin 8, precursor p... 29 5.1
BC069496-1|AAH69496.1| 142|Homo sapiens cystatin 8 (cystatin-re... 29 5.1
AL109954-3|CAB64234.1| 142|Homo sapiens cystatin 8 (cystatin-re... 29 5.1
AL109954-2|CAM28236.1| 134|Homo sapiens cystatin 8 (cystatin-re... 29 5.1
AF059244-1|AAC14707.1| 142|Homo sapiens cystatin-related epidid... 29 5.1
U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein. 29 6.8
U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived n... 29 6.8
BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor al... 29 6.8
AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived... 29 6.8
AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived... 29 6.8
AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor al... 29 6.8
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 51.6 bits (118), Expect = 1e-06
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 63 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 239
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 240 HI-IDGSRSI*KGR--PSSPTTPIK 305
+ DG+ + +G P + T P K
Sbjct: 80 ELRADGTVNQIEGEATPVNLTEPAK 104
Score = 33.1 bits (72), Expect = 0.42
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 266 IEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 90 IEGEATPVN-LTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSC 134
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 31.9 bits (69), Expect = 0.96
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 308 AKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNC 409
AKL V KF +LATDY NYA+ Y+C
Sbjct: 12 AKLEV--KFSWFMPSAPYWILATDYENYALVYSC 43
>BC105119-1|AAI05120.1| 142|Homo sapiens cystatin 8
(cystatin-related epididymal specific) protein.
Length = 142
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>BC105113-1|AAI05114.1| 142|Homo sapiens cystatin 8, precursor
protein.
Length = 142
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>BC069496-1|AAH69496.1| 142|Homo sapiens cystatin 8
(cystatin-related epididymal specific) protein.
Length = 142
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>AL109954-3|CAB64234.1| 142|Homo sapiens cystatin 8
(cystatin-related epididymal specific) protein.
Length = 142
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>AL109954-2|CAM28236.1| 134|Homo sapiens cystatin 8
(cystatin-related epididymal specific) protein.
Length = 134
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>AF059244-1|AAC14707.1| 142|Homo sapiens cystatin-related
epididymal spermatogenic protein protein.
Length = 142
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 GTCPELKPVNNFNLTAYQGIWYEISKFPNESE 173
G +LKPVN N Q +W+ + ++ ESE
Sbjct: 30 GVLRKLKPVNASNANVKQCLWFAMQEYNKESE 61
>U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 249 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 294
>U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived
neurotrophic factor receptor beta protein.
Length = 464
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 249 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 294
>BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 249 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 294
>AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2b protein.
Length = 359
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 144 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 189
>AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2c protein.
Length = 331
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 116 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 161
>AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 210 PVCIQLKSICRSSQI-RWEISRFHTRCLGKLSS*SCSPVSARGRCL 76
P C+ L+ +CR+ + R ++ FH C + + P CL
Sbjct: 249 PNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACL 294
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,407,783
Number of Sequences: 237096
Number of extensions: 915554
Number of successful extensions: 1830
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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