Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0715
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    40   5e-04
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    31   0.44 
At1g59560.1 68414.m06698 expressed protein contains similarity t...    30   0.78 
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   1.0  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   2.4  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    27   7.2  
At5g37100.1 68418.m04453 replication protein-related weak simila...    27   7.2  
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro...    27   7.2  
At2g14800.1 68415.m01677 hypothetical protein                          27   7.2  
At3g05150.1 68416.m00559 sugar transporter family protein simila...    26   9.6  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 90  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGSRS 263
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G R 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 264 I*KG 275
             +G
Sbjct: 66  FIEG 69


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 147 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI-IDGSRSI*KGRPSSPTTPI 302
           +S FP ES+ + K ++ E+KL G  + V VKN+++  D    I  G+P   T  +
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYLSCDPYMRIRMGKPDPSTAAL 68


>At1g59560.1 68414.m06698 expressed protein contains similarity to
           apoptosis inhibitors
          Length = 338

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 169 LRRTANALQLNTNWKVTW*RSRTCISSTAQEV--YRRDG 279
           L+RTA    L  NW+ +W R+ T +    +EV  Y  DG
Sbjct: 78  LKRTAEQQVLRRNWRFSWVRNSTLMQPMTKEVPWYLDDG 116


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 102 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 239
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 263 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 400
           Y   +  ++    KA      F  G  ++DG   +L  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 329 KFGEISRDGSVQVLATDYNNYAIAYNCKY 415
           KFGE S       L T YN+Y ++ +CK+
Sbjct: 321 KFGESSLGMLRTALLTAYNDYRLSKDCKW 349


>At5g37100.1 68418.m04453 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 269

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 VNNFNLTAYQGIWYEISKFP-NESEKNGKCSSAEYKLE 212
           +NNF  + ++G WY I+ F    +    K SS  Y++E
Sbjct: 60  LNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97


>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400); similar to
           phytochrome A supressor spa1  (GI:4809171) [Arabidopsis
           thaliana]; contains non-consensus (GC) donor splice
           sites at introns 4 and 6
          Length = 1017

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 177 NGKCSSAEYKL-EGDVVKVKNVHIIDGSRSI*KGRPSS 287
           N  CSS +    EGDVV+   V   +GS     GRPSS
Sbjct: 77  NEPCSSRQNTNDEGDVVEELTVKTCEGSSMAIVGRPSS 114


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 130 KASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTC--ISSTAQEV 264
           K  G+KS  F  N  +     + N  W  TW R  TC  I S   EV
Sbjct: 175 KLKGLKSWMFKYNFEKRILEKRHNRGWLHTWSRRVTCRKIKSAKLEV 221


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 148 SRNFPTNLRRTANALQLNTNWKVTW 222
           S  FP NL+ TA  L    NW  +W
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSW 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,596
Number of Sequences: 28952
Number of extensions: 145230
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)