Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0712
         (433 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SEV6 Cluster: Putative uncharacterized protein orf143...    33   3.4  
UniRef50_Q54PV2 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  
UniRef50_Q9ZB57 Cluster: NrpB; n=1; Proteus mirabilis|Rep: NrpB ...    32   5.9  
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase...    32   5.9  
UniRef50_A7FG34 Cluster: FliB family protein; n=6; Yersinia|Rep:...    31   7.8  

>UniRef50_Q9SEV6 Cluster: Putative uncharacterized protein orf143;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf143 - Guillardia theta (Cryptomonas phi)
          Length = 143

 Score = 32.7 bits (71), Expect = 3.4
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 286 KVLITVDFYYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVNCI-FSIF 119
           ++LI +D Y K ++L NIYC  ++ QCS +S     V   +N I  N  N I F +F
Sbjct: 37  EILILIDNYCKVFYL-NIYCFPTNDQCSFISIIGLTV---ANIIYSNHFNLISFLLF 89


>UniRef50_Q54PV2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 279

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 286 KVLITVDFYYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFIS-DNLVNCIFSIF 119
           K+  T+ F   Q+F+  I+C I+ + C  +S   H ++   +F   + L++ + SIF
Sbjct: 52  KLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIF 108


>UniRef50_Q9ZB57 Cluster: NrpB; n=1; Proteus mirabilis|Rep: NrpB -
           Proteus mirabilis
          Length = 575

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 238 NIYCIISDMQCSVVSTSTHDVILWSNFISDNLV 140
           NI  I SD  CS VS+   DV+L+S  I DN++
Sbjct: 399 NINQINSDKLCSYVSSVYQDVVLFSGTIKDNIL 431


>UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase -
           Plasmodium falciparum
          Length = 576

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -1

Query: 280 LITVDFYYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVN----CIFSIFSK 113
           LIT +   K Y+L  +YC ++  QC +   S        NF+++N  N    C  SI S+
Sbjct: 377 LITENDEQKYYYLSELYCSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISR 436


>UniRef50_A7FG34 Cluster: FliB family protein; n=6; Yersinia|Rep:
           FliB family protein - Yersinia pseudotuberculosis IP
           31758
          Length = 397

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 283 VLITVDFYYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVNCIF 128
           V IT+D    Q ++K+ Y  I  +  S +S +   +  W+N   DN  NC F
Sbjct: 30  VSITLDKNRYQRYIKSPYSDIKRIAISHISVTQDSLASWANINPDNQGNCPF 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,774,868
Number of Sequences: 1657284
Number of extensions: 5636691
Number of successful extensions: 12745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12741
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)