Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0712
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    28   0.53 
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    26   2.2  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   2.2  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   6.6  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   6.6  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    24   8.7  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    24   8.7  

>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 301 DYPQTKVLITVDFYYKQYFLKNIYCIISDMQCSVVSTSTHD 179
           D+P  KV+   DF Y+ Y  K I C ++    ++  T+  D
Sbjct: 124 DFPHAKVV--QDFLYRFYETKGIICAVAQANIALAYTTNSD 162


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +3

Query: 99  VSGKSLEKIEKIQLTKLSEIKFDHKITSCVLVLTTLHCISLMIQYIFFK 245
           +S K+LEK EKI L  L+   FD  + S   V + L    L+ Q++FFK
Sbjct: 162 LSTKNLEKYEKIVLALLN---FDIYVISLPSVESFL--TPLIFQHVFFK 205


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 262 YYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVNCIFSIFSKLLPLTY 95
           YYK Y  KN Y   +    ++   +  D I  SN+ISD     + ++F  ++PL Y
Sbjct: 64  YYK-YDWKNAYIYATLPTINMGRMTMLDAIK-SNYISDMSKADVDAVFDSIIPLRY 117


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -1

Query: 244 LKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVNCI 131
           L+N+  ++SD+Q  +  T  ++ +L  + ++ +L NC+
Sbjct: 323 LRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDL-NCL 359


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 202 VVSTSTHDVILWSNFISDNLVNCIFSIFSKL 110
           VV+   H + +W NF+S   +N   S  S++
Sbjct: 194 VVAFLQHGIRIWDNFLSSKSINSFESSESQM 224


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 247 FLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLVNCIFSIFSKL 110
           F+  I  + S +  S  STS HD   +   IS+N  N   +I S +
Sbjct: 18  FINYIPLLASPINSSTCSTSIHDKCPFKQHISENGQNFGSAISSNI 63


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +3

Query: 111 SLEKIEKIQLTKLSEIKFDHKITSCV 188
           SLE++ K++L ++   + +H+++S +
Sbjct: 78  SLEELSKLELDEVQRDEIEHEVSSAI 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,770
Number of Sequences: 5004
Number of extensions: 26918
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)