Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0712
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 199 VSTSTHDVILWSNFISDNLVNCIFSIFSK 113
           +  +   V+ W  + +  +  CI+++FSK
Sbjct: 39  IHPTVFSVLFWLGYCNSAINPCIYALFSK 67


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 199 VSTSTHDVILWSNFISDNLVNCIFSIFSK 113
           +  +   V+ W  + +  +  CI+++FSK
Sbjct: 487 IHPTVFSVLFWLGYCNSAINPCIYALFSK 515


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 292 QTKVLITVDFYYKQYF 245
           + K+  T+DFY++Q++
Sbjct: 52  EVKMDFTLDFYFRQFW 67


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = -1

Query: 256 KQYFLKNIYCIISDMQCSVVSTSTHDVI 173
           + Y  K ++CI+    C V+     +++
Sbjct: 30  RPYVQKQLHCILDRGHCDVIGKKIKELL 57


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 90  VRGHSEADIKLFNVIGVSNTE 28
           VRG  EA++  F +IG    +
Sbjct: 198 VRGVEEAELPQFTIIGYETND 218


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 SEIKFDHKITSCVLVLTTLHCISLMIQY 233
           S ++FD    SC+  L  L   ++M+ Y
Sbjct: 392 SSVEFDWCAVSCLRELRNLGRKTIMVNY 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,810
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)