Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0712
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60060.1 68418.m07531 F-box family protein various predicted ...    27   7.2  
At4g19930.1 68417.m02920 F-box family protein similar to F-box p...    27   7.2  

>At5g60060.1 68418.m07531 F-box family protein various predicted
           proteins, Arabidopsis thaliana ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 374

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 107 ATNILMSGGILKRILNCSMSSVYLTRKYLQT 15
           A  ++  GG  K ++ CS   V+L  KY++T
Sbjct: 244 AEGLVGGGGHKKHLVECSGGEVFLVDKYVKT 274


>At4g19930.1 68417.m02920 F-box family protein similar to F-box
           protein family, AtFBX8 (GI:20197464) {Arabidopsis
           thaliana}; contains Pfam PF00646: F-box domain
          Length = 431

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 7/41 (17%), Positives = 21/41 (51%)
 Frame = -1

Query: 262 YYKQYFLKNIYCIISDMQCSVVSTSTHDVILWSNFISDNLV 140
           YY  + L+ + C + +    + +T+T  +++  +    N++
Sbjct: 141 YYLSHVLRGLMCFVKEPSVKIYNTTTRQLVVLPDIEESNII 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,680,551
Number of Sequences: 28952
Number of extensions: 125542
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)