Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0710
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    29   0.31 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   2.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   8.7  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    24   8.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 205 SAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 357
           SA  K+  D +  KN  +S  SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 518 SALAKIGHDALNRKN-HASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 139  YQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIK 318
            Y G+  E+S   N +      ++   K     V   NV   T SR + K   + P+ P  
Sbjct: 1187 YHGMQVEVSMVLNVTNPQFVVNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSPPSP 1246

Query: 319  PQS 327
            P S
Sbjct: 1247 PSS 1249


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 121 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSS 300
           N N    +GI  E+SK+ +   KN + SS + K E  V     ++   A       R S 
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLK-ERQVAVRARIEGIKAHEMFLNNRVSE 434

Query: 301 PTTPIKPQ 324
             + ++ Q
Sbjct: 435 INSSLEKQ 442


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +1

Query: 154 YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQS 327
           YEI K   +++        +  +  D    KN++ ST  R + K +P+S +  +  ++
Sbjct: 27  YEILKSKKKTQNENDPEPMDISMSPDE---KNLKKSTVRRKLRKSKPNSSSNQVSSRT 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,599
Number of Sequences: 5004
Number of extensions: 26167
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)